Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k19
(643 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26) 85 5e-17
SB_41947| Best HMM Match : SH3_1 (HMM E-Value=6.3e-24) 58 6e-09
SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.) 51 7e-07
SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20) 39 0.003
SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23) 37 0.016
SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.028
SB_4655| Best HMM Match : Spectrin (HMM E-Value=0) 36 0.028
SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17) 35 0.065
SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.065
SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.46
SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16) 32 0.46
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24) 31 0.80
SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38) 31 0.80
SB_37686| Best HMM Match : DUF1011 (HMM E-Value=10) 30 1.4
SB_50467| Best HMM Match : SH3_1 (HMM E-Value=1e-12) 30 1.4
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 30 1.8
SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14) 29 4.2
SB_57028| Best HMM Match : PCNA_C (HMM E-Value=8.9) 27 9.8
SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25) 27 9.8
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
Length = 2157
Score = 85.0 bits (201), Expect = 5e-17
Identities = 49/115 (42%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Frame = +3
Query: 246 RITGSASIETLVRVGIEKEHGLSPDS--KMVVLHDFTPCVDDELEVKRGQIVNVLYREND 419
RITGS+S+++LV + +++ D KMVV HDF PCVDDEL VKRG+ V +LYR+N+
Sbjct: 1766 RITGSSSLDSLVGIVKQEDEDYFADDPKKMVVTHDFIPCVDDELAVKRGERVLMLYRQNN 1825
Query: 420 WVYVIVAESRREGFIPHSYC-APCEHHDLKKKLPRSRSPADLAHRDVSQLSVSDG 581
W Y I EGFIP + C A E+ + KL R + + D S+ G
Sbjct: 1826 W-YYIKNSRNTEGFIPFTNCIAEDEYEKRQNKLSRQNIIRNTSFLDSMDSSIYPG 1879
Score = 44.8 bits (101), Expect = 6e-05
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +3
Query: 330 VVLHDFTPCVDDELEVKRGQIVNVLYREN-DWVYVIVAESRREGFIPHSYCAPCEHHDLK 506
V L DF +D++ +G +V VL +++ DW Y +V S EGFIP + P + +K
Sbjct: 1894 VALWDFNATAEDDITASKGDVVTVLNKDDPDW-YWVVKRSGDEGFIPKEFIIPADQLSVK 1952
Query: 507 KKLPRSRSPADLAHRD 554
S S + +D
Sbjct: 1953 CASHSSNSSTTTSSQD 1968
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 327 MVVLHDFTPCVDDELEVKRGQIVNVLYREND---WVYVIVAESRREGFIPHSYCAP 485
+V +T D+EL V +G V ++ D W++ S ++G++P + P
Sbjct: 2096 LVCTDTYTAQQDNELTVFKGDWVYADMQQRDARGWIWAYSPASHKQGYVPRACLRP 2151
>SB_41947| Best HMM Match : SH3_1 (HMM E-Value=6.3e-24)
Length = 581
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/50 (54%), Positives = 37/50 (74%)
Frame = +3
Query: 333 VLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSYCA 482
VL +F P + EL+V +G++V VLYRE+DWV V+ + RR GFIP SYC+
Sbjct: 89 VLWNFEPVENSELKVVKGEMVVVLYREDDWVLVVNSNGRR-GFIPFSYCS 137
Score = 51.2 bits (117), Expect = 7e-07
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +3
Query: 315 PDSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 476
P K +VL+DF C +D++ V +G +VNVL R++D + + EGF+P SY
Sbjct: 307 PHFKAMVLYDFEACAEDDVSVTKGDVVNVLNRDDDDWWWVTTPRGGEGFVPCSY 360
>SB_14817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 594
Score = 51.2 bits (117), Expect = 7e-07
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3
Query: 339 HDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSYCA 482
HD++ +EL + +GQ V +LY+++DW+YV+ EGFIP SYC+
Sbjct: 216 HDYSSEDPEELNLSKGQTVKILYQQHDWLYVVDLFG-NEGFIPFSYCS 262
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 321 SKMVVLHDFTPCVDDELEVKRGQIVNVLYREN---DWVYVIVAESRREGFIPHSY 476
S+++ L+++ D+L V G+ V ++ W++ +R GFIP +Y
Sbjct: 531 SRLISLYEYEGSAFDDLTVHAGEYVYANLKDQIVPKWIWAYSPYRKRSGFIPEAY 585
>SB_39120| Best HMM Match : SH3_1 (HMM E-Value=2e-20)
Length = 524
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/80 (22%), Positives = 40/80 (50%)
Frame = +3
Query: 294 EKEHGLSPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHS 473
+ + P +++V++ + DEL + G ++ VLY++N+ ++ R+G+ P +
Sbjct: 301 KSKQAAQPKKQVLVMYPYEANRADELTITPGDVITVLYQDNENWWMGELADGRQGYFPSN 360
Query: 474 YCAPCEHHDLKKKLPRSRSP 533
Y E D + L ++ P
Sbjct: 361 YIMEKEELDSEADLKETQLP 380
>SB_48483| Best HMM Match : SH3_1 (HMM E-Value=7.1e-23)
Length = 936
Score = 36.7 bits (81), Expect = 0.016
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 327 MVVLHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSY 476
+V L+DF EL K+G + VL +E+D W VAE+ EG P +Y
Sbjct: 3 VVALYDFVAQEAGELNFKKGNHIEVLDKEDDNWWKGRVAETGEEGLFPRNY 53
>SB_33663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +3
Query: 330 VVLHDFTPCVDDELEVKRGQIVNVLYRE--NDWVYVIVAESRREGFIPHSYCAPCE 491
+ L+D+ ++L K+G+++ V + NDW ++ EG+IP +Y AP E
Sbjct: 74 LALYDYDARTQEDLSFKKGEVLEVNPDDLANDWWRAKSRDTGAEGYIPMNYVAPME 129
>SB_4655| Best HMM Match : Spectrin (HMM E-Value=0)
Length = 934
Score = 35.9 bits (79), Expect = 0.028
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +3
Query: 291 IEKEHGLSPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYREN-DWVYVIVAESRREGFIP 467
+ ++ +S +V L+D+ E+ +K+G I+ +L N DW V + R+GF+P
Sbjct: 841 VSQDTDISDKECVVALYDYQEKTAREVSMKKGDILTLLNSTNKDWWK--VETNDRQGFVP 898
Query: 468 HSYCAPCEHHDLKKKL 515
+Y + H ++L
Sbjct: 899 AAYVKRIDSHKASQEL 914
>SB_49450| Best HMM Match : SH3_1 (HMM E-Value=6.9e-17)
Length = 288
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 336 LHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSYCAPCEHHDL 503
L+++ P +DELE+K+G+ VL + D W + S++ G P +Y H L
Sbjct: 76 LYNYKPQKEDELELKQGECYYVLEKCKDGWFKGVSLHSQKRGVFPGNYVRLTSIHSL 132
>SB_38286| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 288
Score = 34.7 bits (76), Expect = 0.065
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 336 LHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSYCAPCEHHDL 503
L+++ P +DELE+K+G+ VL + D W + S++ G P +Y H L
Sbjct: 76 LYNYKPQKEDELELKQGECYYVLEKCKDGWFKGVSLHSQKRGVFPGNYVRLTSIHSL 132
>SB_33664| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3
Query: 330 VVLHDFTPCVDDELEVKRGQIVNVLYR-ENDWVYVIVAESRREGFIPHSYCAP 485
+ L+D+ +++L K+G+ + +L + DW + +EG+IP +Y AP
Sbjct: 81 MALYDYDARTNEDLSFKKGERLQLLDNTDGDWWLAKSLSTDQEGYIPSNYVAP 133
>SB_59147| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 33.5 bits (73), Expect = 0.15
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 342 DFTPCVDDELEVKRGQIVNVLYRE--NDWVYVIVAESRREGFIPHSYCAPCE 491
D PC D L K+G+++ ++ +E N W V +SR G IP C E
Sbjct: 244 DQIPCQDAGLAFKQGEVLQIVDQEDANWWQAKKVDDSRAAGIIPSQICEESE 295
>SB_33662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 285 VGIEKEHGLSPDSKM-VVLHDFTPCVDDELEVKRGQIVNVL--YRENDWVYVIVAESRRE 455
+ + E L + K+ V L+D+ D++L K+G+ + V+ DW S +
Sbjct: 49 IPLSTELTLPAERKLFVALYDYEARTDEDLSFKKGEKLEVVNDLDGGDWWQARSLVSNQV 108
Query: 456 GFIPHSYCAP 485
G+IP +Y AP
Sbjct: 109 GYIPSNYVAP 118
>SB_10519| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 873
Score = 32.3 bits (70), Expect = 0.34
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 336 LHDFTPCVDDELEVKRGQIVNVLYREN-DWVYVIVAESRREGFIPHSY 476
L+D++ EL K+G I+ V R N DW + +S +GF+P SY
Sbjct: 723 LYDYSARSSKELSFKKGDIIRVFKRFNDDWWDGTLGDS--DGFVPASY 768
>SB_3027| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 31.9 bits (69), Expect = 0.46
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 312 SPDSKMVVLHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIPHSYCA 482
SP+ + + +H+F DDE+++++G +V V+ + D W + + G P ++ A
Sbjct: 4 SPE-RYIAIHEFQTTRDDEIDLQKGDVVLVVKKYQDGWFRGVRCRGYQVGCFPGNFVA 60
>SB_18821| Best HMM Match : SH3_1 (HMM E-Value=5.7e-16)
Length = 299
Score = 31.9 bits (69), Expect = 0.46
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 327 MVVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 476
++ L+D+ DDEL K G+IV L +D + + R G P Y
Sbjct: 246 VLALYDYEAAEDDELSFKAGEIVTKLSERDDQGWCRGRINHRTGLFPAEY 295
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 31.1 bits (67), Expect = 0.80
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 369 LEVKRGQIVNVLYREN-DWVYVIVAESRREGFIPHSYCAPCEHHDLKK 509
L V +G+++ ++ + N DW V +SR G++P +Y E +KK
Sbjct: 54 LAVDKGEVLYLIAKTNKDWWSVRRTKSREAGYVPANYVVEIEPKAVKK 101
>SB_54886| Best HMM Match : SH3_2 (HMM E-Value=3.2e-24)
Length = 440
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +3
Query: 324 KMVVLHDFTPCVDD-------ELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 476
KMV L+D+ P EL K+GQ+V +L N Y S R G +P S+
Sbjct: 367 KMVALYDYNPETQSPLSNPSAELSFKKGQVVTILGPMNSDGYYQADISGRRGLVPASF 424
>SB_39302| Best HMM Match : SH3_2 (HMM E-Value=1.9e-38)
Length = 2084
Score = 31.1 bits (67), Expect = 0.80
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Frame = +3
Query: 324 KMVVLHDFTPCVDD-------ELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 476
KMV L+D+ P EL K+GQ+V +L N Y S R G +P S+
Sbjct: 1915 KMVALYDYNPETQSPLSNPSAELSFKKGQVVTILGPMNSDGYYQADISGRRGLVPASF 1972
>SB_37686| Best HMM Match : DUF1011 (HMM E-Value=10)
Length = 131
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = -1
Query: 232 LSPELGLERSLSESPELDFFFFPLLILTGHRNAMFYNV 119
L+PE+ +RS +S + F FP+ +L HR A+F N+
Sbjct: 51 LTPEIS-QRSHGKSSKRVFSCFPVFLLLKHRRAVFVNL 87
>SB_50467| Best HMM Match : SH3_1 (HMM E-Value=1e-12)
Length = 132
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 360 DDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 476
D++L K+G I+ V+ +E D + + REG IP Y
Sbjct: 50 DEDLPFKKGDILTVISKEEDNWWKARDSAGREGMIPKPY 88
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 336 LHDFTPCVDDELEVKRGQIVNVLYREND-WVYVIVAESRREGFIP--HSYCAPCEHHDLK 506
+H++TP DEL + G ++NVL + D W + +G+ P H+ EH +
Sbjct: 939 IHNYTPQQPDELALHEGDVINVLRKLPDGWYHGERLCDGVQGWFPANHTENIRNEHIRAR 998
Query: 507 KKLPRSRSPADLAH 548
L R R A H
Sbjct: 999 NLLQRYRLLAASKH 1012
>SB_58990| Best HMM Match : SH3_1 (HMM E-Value=1.7e-14)
Length = 167
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +3
Query: 330 VVLHDFTPCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSY 476
V HDF DE+ K+ V +L ++ D + G IP +Y
Sbjct: 4 VAKHDFNATCSDEVSFKKAVFVKILNKDVDENWYQAEMDGNSGMIPANY 52
>SB_57028| Best HMM Match : PCNA_C (HMM E-Value=8.9)
Length = 161
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +3
Query: 267 IETLVRVGIEKEHGLSPDSKMVVLHDFTPCVDDELE 374
++ L R+ ++ LSP++K VL DF+ +DDEL+
Sbjct: 90 LKALNRIQVQLA-SLSPETKGYVLVDFSEPLDDELQ 124
>SB_41533| Best HMM Match : SH2 (HMM E-Value=6.3e-25)
Length = 389
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +3
Query: 363 DELEVKRGQ--IVNVLYRENDWVYVIVAESRREGFIP 467
DEL +G IV+ ++ +NDW++V +S+ G +P
Sbjct: 169 DELSFCKGDVFIVDNVF-DNDWLWVAAQKSKERGLVP 204
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 351 PCVDDELEVKRGQIVNVLYRENDWVYVIVAESRREGFIPHSYCAP 485
P + +L KRG+ VL W+YV ++ G+IP + AP
Sbjct: 48 PDLSAQLLAKRGKKFIVLGPVGWWLYVKSVDTGDTGYIPSLHVAP 92
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,781,815
Number of Sequences: 59808
Number of extensions: 409010
Number of successful extensions: 965
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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