Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k18
         (609 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8; Plasm...    36   0.99 
UniRef50_UPI00005A3A48 Cluster: PREDICTED: similar to MyoD famil...    35   1.7  
UniRef50_Q84K15 Cluster: Putative uncharacterized protein OSJNBa...    32   9.3  

>UniRef50_Q8I5X9 Cluster: DNA-directed RNA polymerase; n=8;
           Plasmodium|Rep: DNA-directed RNA polymerase - Plasmodium
           falciparum (isolate 3D7)
          Length = 1450

 Score = 35.5 bits (78), Expect = 0.99
 Identities = 18/70 (25%), Positives = 36/70 (51%)
 Frame = -2

Query: 596 YSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAALHTNAPDILSFRPRRLHFTPLRLNMYT 417
           + FT++   +  LS Y      ++LR  +TG  ++ N PD+    P+ +    ++  + T
Sbjct: 609 FYFTLKKQIDQTLSKYMQSNYNSKLR--STGNNMNDNYPDVFRNLPKDIITRGMQTAIST 666

Query: 416 ANWAVKTFEL 387
            NW +K F++
Sbjct: 667 GNWNIKRFKM 676


>UniRef50_UPI00005A3A48 Cluster: PREDICTED: similar to MyoD family
           inhibitor domain containing isoform p40; n=2;
           Eutheria|Rep: PREDICTED: similar to MyoD family
           inhibitor domain containing isoform p40 - Canis
           familiaris
          Length = 280

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 193 IPSLLNIPTPWHEDLRSTRSSPKLLFKLSPFYEEEIEKS*YNISRLKD--QVTN 38
           IP LL  P PW   + +T+ S   L K+     E  E    NIS LK+  QVTN
Sbjct: 73  IPRLLPCPAPWASSIGNTQMSETELEKIKVRTAEHFENDKNNISWLKEDTQVTN 126


>UniRef50_Q84K15 Cluster: Putative uncharacterized protein
           OSJNBa0037J17.9; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0037J17.9 - Oryza sativa subsp. japonica (Rice)
          Length = 190

 Score = 32.3 bits (70), Expect = 9.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 567 TFVKYVFH*KNWYPPAGFEHRCSATYECTG 478
           T V++VF  + W+P  G   RC  T EC G
Sbjct: 67  TDVRWVFGDEKWWPSYGGMQRCRVTLECAG 96


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 599,063,413
Number of Sequences: 1657284
Number of extensions: 11995493
Number of successful extensions: 25791
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25788
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43562448615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)