Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k18
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    28   1.2  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    27   2.1  
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...    27   2.1  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    27   2.8  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    25   6.5  
SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   8.7  

>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/57 (35%), Positives = 26/57 (45%)
 Frame = -3

Query: 556 VRISLEKLVPACGIRTPVQRYIRMHRTSYPLGHDDSISLHFGLICTPQTGQLKLLSS 386
           V  SL    P     TP  R  + HR + P+   DS +LH        + +LKLLSS
Sbjct: 143 VETSLTMKTPPAHASTPKFRSHKSHRVAVPMSFMDSSALH---TSPAFSERLKLLSS 196


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 1   ENVFINVFFVSINWLLDLLT*KCCINS 81
           +N FIN +F+  N+L +LL   CCI +
Sbjct: 653 QNEFINPYFLQTNYLKNLLC--CCITN 677


>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 434 RLNMYTANWAVKTFELIDYDIFCDCHVGHRCPTRSIQVMMSISVI 300
           RL +YT N  +  F+  D  I     + H+CP    QV +    I
Sbjct: 61  RLFLYTLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAI 105


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +3

Query: 342 APVTHMAVTKNVIIYELKSFNCPVCGVHIKPKWSEMESSWPK 467
           AP T      NV++   K +  P+ G++  P    ++S W K
Sbjct: 226 APATFDHPFANVMVKHFKEWGTPLHGLYAYPTIESLKSRWVK 267


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 565 IC*VRISLEKLVPACGIRTPVQRYIRMHRTS 473
           IC VR      +PAC   +  Q Y ++H++S
Sbjct: 857 ICAVRFEARD-IPACNFNSAYQEYRQLHQSS 886


>SPCC417.04 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 180

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -3

Query: 313 RFLLLWCLNSLTLH 272
           RFLL+WC NS T+H
Sbjct: 119 RFLLIWC-NSETIH 131


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,620
Number of Sequences: 5004
Number of extensions: 53816
Number of successful extensions: 146
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)