Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k18
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    29   3.8  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    28   5.0  
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342...    27   8.8  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 498 RCTGVRIPQAGTNFSNEIRT*QMFTIDFHGE 590
           RCTGV I   G N   +I T      DFHGE
Sbjct: 159 RCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>03_01_0611 +
           4493618-4493641,4494705-4494730,4495758-4497471,
           4498179-4499263,4499351-4500296
          Length = 1264

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +3

Query: 120 SNLGDERVERRSSCQGVGIFSRLGIRN--PKLLRM 218
           +NL     ER SSC GVG    L +RN   KLLR+
Sbjct: 438 TNLVSVTFERVSSCAGVGSIISLSLRNEGTKLLRI 472


>01_05_0511 -
           22831889-22832523,22833743-22833835,22834018-22834215,
           22834365-22834494,22834596-22834714,22835244-22835487,
           22835607-22835807
          Length = 539

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 457 DDSISLHFGLICTPQTGQLKLLSS*IMTFF 368
           DDS++  FG+ C PQ+  + L     MT F
Sbjct: 182 DDSLNFSFGVFCLPQSAVIPLHDHLGMTVF 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,900,448
Number of Sequences: 37544
Number of extensions: 322787
Number of successful extensions: 580
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)