Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k18
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_26342| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)                    27   9.0  
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)       27   9.0  

>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
 Frame = +3

Query: 330 APRRAPVTHMAVTKNVIIYELKSFN---CPVCGV 422
           +P +APV H   TK+  IYE K+ N   C VC V
Sbjct: 851 SPCKAPVAHFTSTKH--IYESKTKNNSLCVVCAV 882


>SB_26342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 170

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 452 LHFTPLRLNMYTANWAVKTFELIDYDIFCDCHVGHR 345
           L  +P+ +N Y   W ++T+    + I C    G+R
Sbjct: 87  LELSPVTINPYLFGWKLQTYRSAFFKIMCGQRFGNR 122


>SB_27238| Best HMM Match : DUF433 (HMM E-Value=8.2)
          Length = 368

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 502 QRYIRMHRTSYPLGHDDSIS 443
           +R+ R+H+ S+ LGH+DS S
Sbjct: 15  RRFKRIHQVSHELGHEDSSS 34


>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
          Length = 1577

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 598  AIPSPWKSIVNIC*VRISLEKLVPACGIRTPVQRYIRMHRTSY--PLGH 458
            AIP+ +  I+  C V  +    VP C  R  V  +I  HR+ Y   +GH
Sbjct: 1430 AIPTHFYKIITRCNVNKTSLYEVPGCSGRLEVISFILPHRSDYHCQVGH 1478


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,622,177
Number of Sequences: 59808
Number of extensions: 387843
Number of successful extensions: 806
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)