Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k18
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.1  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 440  PLRLNMYTANWAVKTFELIDYDIFCD 363
            P RLN+ TA    + +ELID +   D
Sbjct: 1078 PFRLNVETAKTNEEMWELIDTEKLTD 1103


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +3

Query: 390 LKSFNCPVCG 419
           L+++ CP+CG
Sbjct: 70  LRAYTCPICG 79


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -2

Query: 296 VPEFSNFAFSCLLMYIL 246
           +PEF  +  SC+L +++
Sbjct: 200 MPEFPLYQLSCILFFLI 216


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 534 WYPPAGFEHRCSATYE 487
           W PPA ++  CS   E
Sbjct: 143 WQPPAVYKSSCSIDVE 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,844
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)