Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k18
         (609 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containi...    28   4.2  
At5g14570.2 68418.m01709 transporter, putative similar to trans-...    27   7.4  
At5g14570.1 68418.m01708 transporter, putative similar to trans-...    27   7.4  
At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family pr...    27   7.4  
At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r...    27   9.7  

>At1g64100.1 68414.m07261 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 666

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 506 GAALHTNAPDILSFRPRRLHFTPLRLNMYTANWAVKTFELIDYDIFCDCH 357
           G  +  N PD+     R++    + LN+Y+ N  +K         FCDCH
Sbjct: 114 GVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIK--------CFCDCH 155


>At5g14570.2 68418.m01709 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 397

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 596 YSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAA 498
           YS+ VE+  +++++ YF  + G  L  + T AA
Sbjct: 279 YSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At5g14570.1 68418.m01708 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 493

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 596 YSFTVEVNREHLLSTYFIRKIGTRLRDSNTGAA 498
           YS+ VE+  +++++ YF  + G  L  + T AA
Sbjct: 279 YSYGVELTTDNVIAGYFYERFGVNLEAAGTIAA 311


>At4g00870.1 68417.m00118 basic helix-loop-helix (bHLH) family
           protein similar to the myc family of helix-loop-helix
           transcription factors; contains Pfam profile PF00010:
           Helix-loop-helix DNA-binding domain; PMID: 12679534
          Length = 423

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 431 LNMYTANWAVKTFELIDYDIFCDCHVGHRCPTRSIQVMMSISVIMVPE 288
           + + T N    T  L+   +  DC V H   +R  QVM+   V++VPE
Sbjct: 358 IRVQTENVNHPTSALMSALMEMDCRVQHANASRLSQVMVQDVVVLVPE 405


>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 801

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 220 FILSNFGFLIPSLLNIPTPWHEDLRSTRSSPKLLFKLSPFYEEEIEKS 77
           + +   G +I  +  I    ++DLR   +S KLL  LSPF  EE+ K+
Sbjct: 439 YAIKTSGAIISLVQFIEVRENDDLRL--ASIKLLHNLSPFMSEELAKA 484


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,867
Number of Sequences: 28952
Number of extensions: 270084
Number of successful extensions: 582
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)