Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k17
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...   170   4e-43
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...   166   9e-42
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    29   1.4  
At5g26850.1 68418.m03203 expressed protein                             28   4.2  
At5g52700.1 68418.m06542 heavy-metal-associated domain-containin...    27   5.5  
At5g23040.2 68418.m02694 expressed protein similar to unknown pr...    27   5.5  
At5g23040.1 68418.m02693 expressed protein similar to unknown pr...    27   5.5  
At1g48250.1 68414.m05388 hypothetical protein                          27   7.3  
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ...    27   9.6  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score =  170 bits (414), Expect = 4e-43
 Identities = 81/121 (66%), Positives = 99/121 (81%), Gaps = 1/121 (0%)
 Frame = +2

Query: 68  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 244
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 245 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 424
            F+T+FGGGKS+GF LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 425 G 427
           G
Sbjct: 121 G 121


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score =  166 bits (403), Expect = 9e-42
 Identities = 79/121 (65%), Positives = 97/121 (80%), Gaps = 1/121 (0%)
 Frame = +2

Query: 68  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVT-PDVVFVF 244
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 245 GFKTNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 424
            F+T+FGGGKS+G+ LIYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+R
Sbjct: 61  KFRTHFGGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIR 120

Query: 425 G 427
           G
Sbjct: 121 G 121


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 227 DVVFVFGFKTNFGGGKSTGFALIYDT 304
           DV FV GF T+F  G   GFA+ + T
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAIDFAT 276



 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 236 FVFGFKTNFGGGKSTGFALIYDT 304
           FV GF T+F  G  TGF + +DT
Sbjct: 110 FVTGFATDFDVGFDTGFTIGFDT 132


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +2

Query: 107 MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 259
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At5g52700.1 68418.m06542 heavy-metal-associated domain-containing
           protein   contains Pfam profile PF00403:
           Heavy-metal-associated domain
          Length = 370

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +1

Query: 277 NWIRFDLRHTRSGQEVRAQAQVSPPRPVR-EEEAHAQTA*RT*EQNEEGPRYQE 435
           N   F++++  S   V A+ +V PP PVR     +A    +   Q  E P Y++
Sbjct: 202 NGTNFNMKNALSSFRVPARVRVPPPPPVRPASPVYAAGRGKKFNQGNEFPTYKQ 255


>At5g23040.2 68418.m02694 expressed protein similar to unknown
           protein (emb|CAB62636.1)
          Length = 258

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 124 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKTREKK 2
           QQ  GHE +  +   +F    + S IRR   +++ K++ KK
Sbjct: 93  QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKK 133


>At5g23040.1 68418.m02693 expressed protein similar to unknown
           protein (emb|CAB62636.1)
          Length = 258

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 124 QQSVGHELASANSRCSFTHFELFSIIRRLHARVSAKTREKK 2
           QQ  GHE +  +   +F    + S IRR   +++ K++ KK
Sbjct: 93  QQYAGHERSEESIEGAFEKLLMSSFIRRKKTKINLKSKLKK 133


>At1g48250.1 68414.m05388 hypothetical protein
          Length = 354

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
 Frame = +1

Query: 148 CFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIR--FDLRHTRSGQE 321
           C   R++ R+Q+R   EA   V+  +R  +    ++ L            +  H  SG E
Sbjct: 149 CSPLRRSKRRQNRLEEEADVAVEESTRREIGQEEEEALGETSCGGEEEAHEEAHIESGVE 208

Query: 322 VRAQAQVSPPRPVREEE 372
           VRA  + S  R +R+EE
Sbjct: 209 VRAPLRRSKRRRIRDEE 225


>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
           ribosomal protein L2 [Gossypium arboreum] GI:17933133;
           contains Pfam profile PF00181: Ribosomal Proteins L2,
           RNA binding domain
          Length = 307

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 291 KANPVD-LPPPKFVLKPNTNTTSGV 220
           K N ++   PP+ +L+P TNT SG+
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGL 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,168,637
Number of Sequences: 28952
Number of extensions: 231153
Number of successful extensions: 678
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)