Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k15
         (613 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...   117   2e-27
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    28   1.2  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.1  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    27   2.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.8  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   6.5  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   8.6  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score =  117 bits (281), Expect = 2e-27
 Identities = 55/128 (42%), Positives = 79/128 (61%)
 Frame = +2

Query: 203 VTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAG 382
           +T+   +++Q++ E +A  VL  S +  CTYS GY+K Q +YAC+TC  +A    N    
Sbjct: 8   LTVKQYVEQQRELEREAREVLPYSFD-TCTYSMGYLK-QPLYACLTC-QKASGSLN---A 61

Query: 383 VCLACSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGL 562
           VC +CSI+CH +HDLV+L+ KR+FRCDCG  +  S PC    +  +   +N YN NF G 
Sbjct: 62  VCYSCSISCHADHDLVDLFNKRHFRCDCGTTRTHSIPCNLRKSVDECGSENDYNHNFEGR 121

Query: 563 YCICHRPY 586
           +CIC   Y
Sbjct: 122 FCICDTVY 129


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = +2

Query: 275 DEKNCTYSTGYIKR--QAIYACITCCPEAKDDQNQRAGVCLACSIAC-HENHDL-VELYT 442
           D+++ +   G++ R  + IY C  C        +    +C  C  A  HE H+  V + T
Sbjct: 90  DKRSGSKVCGHVFRAGEVIYRCKNC------GLDNTCVLCAPCFHATNHEGHETHVSIST 143

Query: 443 KRNFRCDCGNPK 478
             +  CDCG+P+
Sbjct: 144 SYSGICDCGDPE 155


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = -1

Query: 595 WIRIRSMANTVKSTKVLIINIIF----IEVSLIWCELTRVGFKFWV 470
           W+    +A+    T++LI+   +    I +  ++ ++ R+G KFW+
Sbjct: 190 WMNTLKIASQASKTELLIVGTAYACMLISIVSLYLKMRRLGSKFWL 235


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 134 LRNNYLRDFKRQ*CNVESILILQKSR 57
           +R+N LR+F    C +ES+ IL  SR
Sbjct: 82  IRSNVLREFPESLCRLESLEILDISR 107


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = -3

Query: 167  LHLYSHRSWTCLRNNYLRD---FKRQ*CNVESILILQKSRLITRQSYFL 30
            LHL+S   W C  ++YL++    K      E ILI +K  ++ +  Y +
Sbjct: 1128 LHLFSFFYWKCQHDDYLQENTSSKNNLLQKEWILITKKKVILEQCEYVI 1176


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 31  KKYDWRVINRLFCKIKIDST 90
           K +++R  N  FCK+K D+T
Sbjct: 93  KNWEYRTANSWFCKMKWDNT 112


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 134 DMSTNGVNTNEDVDMADCDGEKVVTMLDVLQEQQD 238
           DM+    +TN  +  +  + EK   + D+LQE QD
Sbjct: 34  DMNNEDSDTNTSITQSPTNSEK---LTDILQESQD 65


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,565,414
Number of Sequences: 5004
Number of extensions: 54384
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)