Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k15
(613 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0304 + 19315546-19315656,19315780-19315938,19316045-193161... 90 1e-18
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 45 5e-05
04_03_0679 + 18610058-18610217,18611551-18611631,18611744-18612081 34 0.10
08_02_1589 + 28070286-28070525,28072224-28072565 30 1.3
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 30 1.7
02_01_0695 - 5202091-5202498,5204103-5204588 30 1.7
01_06_0852 + 32463784-32463834,32463957-32464628,32465515-324656... 29 2.2
08_02_1241 - 25511462-25511614,25511690-25512499 29 3.8
02_03_0390 + 18448671-18448889,18449567-18449632,18449702-184497... 29 3.8
02_01_0261 + 1731654-1732793 28 5.1
12_01_0294 + 2230539-2230870,2232179-2232574,2232676-2232834,223... 27 8.9
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911... 27 8.9
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 27 8.9
04_03_0507 + 16638385-16638466,16638823-16638978,16639220-166392... 27 8.9
>06_03_0304 +
19315546-19315656,19315780-19315938,19316045-19316105,
19316620-19316690,19318323-19318622,19319160-19319798,
19320772-19320831
Length = 466
Score = 90.2 bits (214), Expect = 1e-18
Identities = 37/59 (62%), Positives = 41/59 (69%)
Frame = +2
Query: 425 LVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCICHRPYPDPDA 601
+VEL+TKR FRCDCGN KF SH C+ P K N N YN NF G YC C RPYPDP+A
Sbjct: 148 VVELWTKRKFRCDCGNSKFGSHVCKLCPEKDPENPVNSYNHNFKGSYCTCGRPYPDPEA 206
Score = 78.2 bits (184), Expect = 5e-15
Identities = 35/80 (43%), Positives = 51/80 (63%)
Frame = +2
Query: 188 DGEKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQ 367
+ E VT+ + ++ + E +A+ VLG D K CTY GY+KRQA+++C+TC P
Sbjct: 18 EAEPTVTIGEYIEGIEAEELEADLVLGGDDGKECTYGGGYLKRQAVFSCLTCVPAGV--- 74
Query: 368 NQRAGVCLACSIACHENHDL 427
AGVC ACS+ACH+ H+L
Sbjct: 75 ---AGVCTACSLACHDGHEL 91
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 44.8 bits (101), Expect = 5e-05
Identities = 36/114 (31%), Positives = 49/114 (42%), Gaps = 2/114 (1%)
Frame = +2
Query: 164 EDVDMADCDGEKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTG--YIKRQAIYACI 337
ED D DGE V +D +D E+D N+ + K CT+++ Q Y C
Sbjct: 1562 EDEDDGTSDGELV--SID-----RDEEEDGNSERALAT-KVCTFTSSGSNFMEQHWYFCY 1613
Query: 338 TCCPEAKDDQNQRAGVCLACSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQ 499
TC D G C C+ CH+ H +V + R F CDCG + CQ
Sbjct: 1614 TC------DLTVSKGCCSVCAKVCHQGHRVVYSRSSR-FFCDCGAGGVRGSSCQ 1660
>04_03_0679 + 18610058-18610217,18611551-18611631,18611744-18612081
Length = 192
Score = 33.9 bits (74), Expect = 0.10
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = +2
Query: 194 EKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIK 313
EK +L++LQE+Q ++DD+ A +G+ E ++ Y+K
Sbjct: 113 EKKQRLLELLQEKQQYDDDSVADVGSEIENGAVHAEEYLK 152
>08_02_1589 + 28070286-28070525,28072224-28072565
Length = 193
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Frame = +2
Query: 164 EDVDMADCDGEK----VVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYA 331
+D+D A G V +V +DD NA D+ + +TG + A
Sbjct: 103 DDIDAATATGNDEFAAAVACFNVAAATAAGKDDINAAAAGKDDIDAATATGNDEFATAAA 162
Query: 332 CITCCPEAKDDQNQRAGVCL-AC 397
C KD+ + A C AC
Sbjct: 163 CFNAAAAGKDEFDAAAAACFNAC 185
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +2
Query: 203 VTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAG 382
VT+ V + +DF++DA + + D + CT + Y A + + DD+ QR
Sbjct: 360 VTICIVAAQYKDFDEDAIDGINSDDGEGCTSDSDYDDSDANTCEYSEIADDYDDEKQRQE 419
Query: 383 VC 388
C
Sbjct: 420 HC 421
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 29.9 bits (64), Expect = 1.7
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 257 AVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQRAGVCLACSIACH 412
++LGA + C G + + C+TC A D A C C +A H
Sbjct: 15 SLLGARFFEACAAHRGMSRNECNQYCLTCAAAADDAGGAAAVGCQWCVVAAH 66
>01_06_0852 +
32463784-32463834,32463957-32464628,32465515-32465627,
32465999-32466261,32466803-32466924,32467176-32467253,
32467353-32467409,32467590-32467658,32467903-32467947,
32468303-32468398
Length = 521
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 161 NEDVDMADCDGEKVVTMLDVLQEQQDFEDDANAVLGASDEK 283
NED D + D +KVV + L++ +D DDA G K
Sbjct: 454 NEDSDDDEEDADKVVAQPESLEDDEDDGDDAEDAEGKEKSK 494
>08_02_1241 - 25511462-25511614,25511690-25512499
Length = 320
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 110 SLLSNYF*DMSTNGVNTNEDVDMADCDGEKVVTMLDVLQEQQDFEDDAN-AVLGASDEKN 286
++LS ++++NG +NE A + +K+ L+++ +D E + N + L A D N
Sbjct: 127 NILSRKSAEIASNGSKSNETFQFAVEEMDKIAKQLELMCSNKDAEQEINDSDLNAEDNLN 186
>02_03_0390 + 18448671-18448889,18449567-18449632,18449702-18449761,
18449864-18449959,18452287-18452447,18452669-18452790,
18452872-18453239,18453653-18453739,18453835-18453969,
18454349-18454471,18454771-18454854,18455023-18455187,
18455310-18455486,18455660-18455773,18455912-18456016,
18457056-18457174,18457244-18457385,18457461-18457555,
18457757-18457862,18458125-18458204,18458285-18458461,
18459828-18459912,18460024-18460104,18460208-18460351,
18460468-18460563,18460654-18460854,18461462-18461895,
18462417-18462478,18462622-18462872,18462956-18463030,
18463110-18463300,18463696-18463867,18463956-18464020,
18464646-18464778,18464861-18464962,18465047-18465130,
18465656-18465730,18465818-18465877,18465967-18466223,
18466560-18466608,18466781-18466941,18467013-18467079,
18467174-18467299,18467422-18467592,18468566-18468769,
18469059-18469165,18469608-18469737,18469774-18469959,
18470704-18470742
Length = 2202
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 357 KTIKTRELESAWHAASLAMKTMIWSSYIQKGTS 455
K+ K R ++ W A L MKT SY+++ S
Sbjct: 1435 KSAKRRSIQDGWDLAELQMKTTAECSYLEQTVS 1467
>02_01_0261 + 1731654-1732793
Length = 379
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +2
Query: 506 PNKTDFNEDNIYNQNFSGLY-CICHRPYPDPDATF 607
PN + Y SG Y +CHRP D DAT+
Sbjct: 134 PNDNELRALGFYFHRPSGEYRVLCHRPLLDVDATY 168
>12_01_0294 +
2230539-2230870,2232179-2232574,2232676-2232834,
2233109-2233505
Length = 427
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Frame = +2
Query: 407 CHENHDLVELYTKRNFRCD-CGNPKFKSHPC--QFTPNKTDFNEDNIYNQNFSGLYCICH 577
C EN + YTK +R C P+F + + + F D+I + L C+
Sbjct: 87 CSENGRPDDSYTKWRWRPSRCDLPRFNARNMLEKLRNRRVVFVGDSIARNQWESLLCMLA 146
Query: 578 RPYPDPDATFE 610
PD + FE
Sbjct: 147 AAVPDKSSIFE 157
>10_06_0110 +
10889414-10889669,10889756-10889806,10890595-10891163,
10891178-10891660,10891747-10891944,10893300-10893354,
10893372-10893631
Length = 623
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 273 PTRRTAPILRAT*NVKPFTPALHAALKPKTIKTRELESAWHAASLA 410
PT P+ T + PFT ALH A + ++ W A++A
Sbjct: 18 PTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVA 63
>04_04_1658 -
35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 196 KSCNYARCFTRTAGF*RRRKCCSWSLRREELHLFYG 303
+ C R R G R++ CSW+ +E+H FYG
Sbjct: 750 RECQGIRGAMRRKGL-RKQGGCSWTEVDKEVHFFYG 784
>04_03_0507 +
16638385-16638466,16638823-16638978,16639220-16639264,
16640033-16640112,16640573-16641076
Length = 288
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 197 KVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQNQR 376
K T +D ++Q D A + A DE N T+STG + Q + +TC + + Q+
Sbjct: 205 KATTCVDH-RKQDTTRTDGPAAMSA-DEANATFSTGNL--QQVNVIVTCNGDGSQESIQK 260
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,557
Number of Sequences: 37544
Number of extensions: 340290
Number of successful extensions: 925
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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