Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k15
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)             140   6e-34
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        28   5.2  
SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)             28   6.9  
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_30739| Best HMM Match : Keratin_B2 (HMM E-Value=0.87)               27   9.1  
SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_48572| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score =  140 bits (340), Expect = 6e-34
 Identities = 60/107 (56%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
 Frame = +2

Query: 194 EKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITC-CPEAKDDQN 370
           ++VV+M+DVLQE  + E++ANAV G SD++ CTY  GY+ RQA+YAC TC CP ++    
Sbjct: 8   DEVVSMVDVLQEDNELEEEANAVFGDSDDQQCTYEKGYVGRQALYACSTCSCPSSEP--- 64

Query: 371 QRAGVCLACSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPN 511
             AG+CLACS+ CH+ H+L ELYTKRNFRCDCGN KF+   C+  P+
Sbjct: 65  --AGLCLACSLTCHDGHELYELYTKRNFRCDCGNSKFEGFNCKLFPH 109


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
 Frame = +2

Query: 242 EDDANAVLGASDE---KNCTYSTGY--IKRQAIYACITCCPEAKDDQNQRAGVCLACSIA 406
           EDD+       D    K CT++        Q  Y C TC        N   GVC  C+  
Sbjct: 54  EDDSGGEESDEDSLSNKLCTFTVTQKEFMNQHWYHCHTC------KMNDGVGVCTVCAKV 107

Query: 407 CHENHDLVELYTK-RNFRCDCG 469
           CH++HD+   Y K  +F CDCG
Sbjct: 108 CHKDHDVT--YAKYGSFFCDCG 127


>SB_19120| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 918

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 395 CSIACHENHDLVEL-YTKRNFRCDCGNPKFKSHPCQFTPNKTDF 523
           C  +CH + D + + Y ++ +RC+       SHP    P    F
Sbjct: 188 CRQSCHSHKDCLSINYKEKEYRCELNAATHLSHPQMLRPEANAF 231


>SB_42318| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 474

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 395 CSIACHENHDLVEL-YTKRNFRCDCGNPKFKSHPCQFTPNKTDF 523
           C  +CH + D   + Y ++ +RC+       SHP    P    F
Sbjct: 50  CRQSCHSHKDCFSINYKEKEYRCELNAATHLSHPQMLRPEANAF 93


>SB_8983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 606

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/61 (24%), Positives = 21/61 (34%)
 Frame = +2

Query: 395 CSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCIC 574
           C   C EN        K    C+  N    +        KTD   D+ YN++     C+ 
Sbjct: 343 CGAQCLENTQCASYNVKNGVTCELNNETMATQTASL---KTDPKADHYYNEDMEYKSCLD 399

Query: 575 H 577
           H
Sbjct: 400 H 400


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 24/96 (25%), Positives = 33/96 (34%)
 Frame = +2

Query: 179 ADCDGEKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAK 358
           AD   +K + M  V       +     VL  +D  + T++      Q I+ C TC     
Sbjct: 488 ADGVVDKEILMTMVFPSDGHPDSSPLQVLCCNDTCSFTWTGTEHINQDIFECRTC----- 542

Query: 359 DDQNQRAGVCLACSIACHENHDLVELYTKRNFRCDC 466
                    C  C+  CH  HD     T     CDC
Sbjct: 543 -GLTGSLCCCTECARVCHRGHDCKLKRTSPTAYCDC 577


>SB_38097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1099

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 601 CIWIRIRSMANTVKSTKVLIINIIFIEVSLIWCE 500
           C+W +     NT++   VLI+N   I+V   W E
Sbjct: 891 CMWGKFGEHVNTIEVNDVLIVNDDLIQVHYRWGE 924


>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 164 EDVDMADCDGEKVVTMLDVLQEQQDFEDDANAVLGASDEKN 286
           EDV+M D D E  V M D  + +   ++D N  +   DEKN
Sbjct: 261 EDVEMEDVDREGDVDMHDHDRFEVGKKNDQNESMERGDEKN 301


>SB_11815| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.002)
          Length = 1725

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +1

Query: 19  LQIFKKYDWRVINRLFCKIKIDSTLHYCRLKSLK*LFLRHVHER 150
           L+I K++   +IN L   I  D T HYC +K++  L     H R
Sbjct: 355 LRISKRHGAHMINLLL--ISNDETSHYCWIKNMSRLLSSQNHTR 396


>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 224 QEQQDFEDDANAVLGASDEKNC 289
           QEQQDF  D++A     +E+NC
Sbjct: 137 QEQQDFASDSSAGSQTEEEENC 158


>SB_30739| Best HMM Match : Keratin_B2 (HMM E-Value=0.87)
          Length = 231

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 341 CCP-EAKDDQNQRAGVCLACSIACHEN 418
           CC  E+ DD N  +G+ LA   +CHEN
Sbjct: 64  CCDAESSDDGNNESGI-LADDDSCHEN 89


>SB_21585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 313 FYVARRIGAVLLVGGSKNSICVVFKILLFL*NIEHSYN 200
           FYV R  G + ++ G+      VF  LLFL ++++  N
Sbjct: 378 FYVNRLTGQLAIIPGAFTGALPVFNSLLFLVSVDYPTN 415


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,001,593
Number of Sequences: 59808
Number of extensions: 407196
Number of successful extensions: 1338
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)