Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k15
(613 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g23860.2 68417.m03431 PHD finger protein-related similar to P... 155 2e-38
At4g23860.1 68417.m03430 PHD finger protein-related similar to P... 155 2e-38
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 47 9e-06
At1g26890.1 68414.m03279 hypothetical protein 32 0.26
At5g66640.1 68418.m08399 LIM domain-containing protein-related c... 30 1.1
At3g32270.1 68416.m04114 hypothetical protein similar to putativ... 29 3.2
At2g45700.1 68415.m05682 sterile alpha motif (SAM) domain-contai... 28 5.6
At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger) fa... 27 7.4
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote... 27 9.8
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote... 27 9.8
At3g58770.1 68416.m06550 expressed protein ; expression support... 27 9.8
>At4g23860.2 68417.m03431 PHD finger protein-related similar to Pfam
profiles PF02207: Putative zinc finger in N-recognin,
weak hit to PF00628: PHD-finger
Length = 452
Score = 155 bits (377), Expect = 2e-38
Identities = 66/137 (48%), Positives = 90/137 (65%)
Frame = +2
Query: 188 DGEKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQ 367
+ E +T+ + ++ E A+ VLG + CT+ GY+KRQAI++CITC PE
Sbjct: 9 EAEGTITINEYIERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITCTPEGN--- 65
Query: 368 NQRAGVCLACSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQ 547
AG+C AC ++CH+ H+L+EL+TKRNFRCDCGN KF + C+ P+K N +N YN
Sbjct: 66 ---AGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSYNH 122
Query: 548 NFSGLYCICHRPYPDPD 598
NF GLYC C RPYPDP+
Sbjct: 123 NFKGLYCTCDRPYPDPN 139
>At4g23860.1 68417.m03430 PHD finger protein-related similar to Pfam
profiles PF02207: Putative zinc finger in N-recognin,
weak hit to PF00628: PHD-finger
Length = 452
Score = 155 bits (377), Expect = 2e-38
Identities = 66/137 (48%), Positives = 90/137 (65%)
Frame = +2
Query: 188 DGEKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTGYIKRQAIYACITCCPEAKDDQ 367
+ E +T+ + ++ E A+ VLG + CT+ GY+KRQAI++CITC PE
Sbjct: 9 EAEGTITINEYIERLDAEELAADLVLGGDEGDECTFPKGYMKRQAIFSCITCTPEGN--- 65
Query: 368 NQRAGVCLACSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQ 547
AG+C AC ++CH+ H+L+EL+TKRNFRCDCGN KF + C+ P+K N +N YN
Sbjct: 66 ---AGICTACCLSCHDGHELLELWTKRNFRCDCGNSKFGTLACKLLPSKDIENSENSYNH 122
Query: 548 NFSGLYCICHRPYPDPD 598
NF GLYC C RPYPDP+
Sbjct: 123 NFKGLYCTCDRPYPDPN 139
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 47.2 bits (107), Expect = 9e-06
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 3/134 (2%)
Frame = +2
Query: 134 DMSTNGVNTNEDVDMADCDGEKVVTMLDVLQEQQDFEDDANAVLGASDEKNCTYSTG--Y 307
D + ++ DV D D + + +V ++ E+DAN+ + K CT+++
Sbjct: 1525 DQEGSSISLECDVTSVDEDEDDGTSDGEVASLDKEDEEDANSERYLAS-KVCTFTSSGSN 1583
Query: 308 IKRQAIYACITCCPEAKDDQNQRAGVCLACSIACHENHDLVELYTKRNFRCDCGNPKFKS 487
Q Y C TC D G C C+ CH H +V + R F CDCG +
Sbjct: 1584 FMEQHWYFCYTC------DLTVSKGCCSVCAKVCHRGHRVVYSRSSR-FFCDCGAGGVRG 1636
Query: 488 HPCQ-FTPNKTDFN 526
CQ P K + N
Sbjct: 1637 SSCQCLKPRKYNGN 1650
>At1g26890.1 68414.m03279 hypothetical protein
Length = 280
Score = 32.3 bits (70), Expect = 0.26
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +2
Query: 146 NGVNTNEDVDMADCDGEKVVTMLDVLQEQQDFEDDANAVLGA 271
N V ++DVD + D E VV +DV + ++D +DD N L A
Sbjct: 181 NEVEDDDDVDEVEDDEEGVVEEVDVGEVEEDDDDDLNRSLVA 222
>At5g66640.1 68418.m08399 LIM domain-containing protein-related
contains low similarity to Pfam profile PF00412: LIM
domain
Length = 450
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/73 (24%), Positives = 27/73 (36%)
Frame = +2
Query: 386 CLACSIACHENHDLVELYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLY 565
CL C CH + E+ K F DC +++ C K N + I + +
Sbjct: 96 CLCC-FHCHRPFVMHEILKKGKFHIDCYKEYYRNRNCYVCQQKIPVNAEGIRKFSEHPFW 154
Query: 566 CICHRPYPDPDAT 604
+ P D D T
Sbjct: 155 KEKYCPIHDEDGT 167
>At3g32270.1 68416.m04114 hypothetical protein similar to putative
replication protein A1 GB:AAC95163 GI:4006821 from
[Arabidopsis thaliana]
Length = 209
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +3
Query: 426 WSSYIQKGTSVVIV---VTQNLNPTRVNSHQIRLTSMKIIFIIKT 551
++ +I G + I+ V NLNP RV SH+ ++ K + KT
Sbjct: 62 YNKFIDAGDWITIMRFGVYPNLNPVRVTSHKFKICFFKDTVVRKT 106
>At2g45700.1 68415.m05682 sterile alpha motif (SAM)
domain-containing protein similar to SNM1 protein [Mus
musculus] GI:7595835; contains Pfam profile PF00536: SAM
domain (Sterile alpha motif)
Length = 723
Score = 27.9 bits (59), Expect = 5.6
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 250 RKCCSWSLRREELHLFYGLHKTSSHLRLHYML 345
R CC W L L + GL K+ SH +++ L
Sbjct: 413 RDCCHWFLTHFHLDHYQGLTKSFSHGKIYCSL 444
>At3g19910.1 68416.m02521 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 340
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 359 DDQNQRAGVCLACSIACHENHDLVELYTKRNFRCDCGN 472
D+QN C+ C + ++ DL+ L K ++ +C N
Sbjct: 279 DNQNGTNESCVICRLDYEDDEDLILLPCKHSYHSECIN 316
>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 559
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +2
Query: 434 LYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCICHRPYPDPDATFE 610
L TK FRC NP P K+ + + S + P P+P+A FE
Sbjct: 16 LNTKPRFRCSFSNPSLPISPNSLITRKSSRFTTAVSSPPSSSAATSTNSP-PEPEALFE 73
>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
similar to cell death suppressor protein lls1 from Zea
mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
[2Fe-2S] domain
Length = 536
Score = 27.1 bits (57), Expect = 9.8
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +2
Query: 434 LYTKRNFRCDCGNPKFKSHPCQFTPNKTDFNEDNIYNQNFSGLYCICHRPYPDPDATFE 610
L TK FRC NP P K+ + + S + P P+P+A FE
Sbjct: 16 LNTKPRFRCSFSNPSLPISPNSLITRKSSRFTTAVSSPPSSSAATSTNSP-PEPEALFE 73
>At3g58770.1 68416.m06550 expressed protein ; expression supported
by MPSS
Length = 771
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -3
Query: 194 PHRNLPYRRLHLYSHRSWTCLR 129
P ++ Y L Y+H+SW C R
Sbjct: 538 PDASIDYSSLGTYTHQSWVCQR 559
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,043
Number of Sequences: 28952
Number of extensions: 283478
Number of successful extensions: 790
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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