Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k14
(261 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 27 0.41
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 27 0.54
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 26 0.95
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 1.7
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 2.2
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S... 25 2.2
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 24 2.9
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual 23 5.1
SPAC6G10.07 |||nuclear cap-binding complex large subunit |Schizo... 23 5.1
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 23 5.1
SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase family|Sc... 23 5.1
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 23 6.7
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 23 6.7
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 23 6.7
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 23 6.7
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr... 23 6.7
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 23 6.7
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 23 6.7
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 23 6.7
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 23 8.8
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy... 23 8.8
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 23 8.8
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 23 8.8
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos... 23 8.8
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 23 8.8
SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalyti... 23 8.8
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 23 8.8
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual 23 8.8
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo... 23 8.8
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 27.1 bits (57), Expect = 0.41
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 130 RPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKRG 261
+P G++P K +KRGRPP + S K DD P RG
Sbjct: 112 KPIDEGSEPIIK--RKRGRPPKIKSSSPSTK-LDDPLKPKRGRG 152
Score = 25.4 bits (53), Expect = 1.3
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 5/37 (13%)
Frame = +1
Query: 91 DDGSTVVEKKGRGR-PKANGTQPESK---ELK-KRGR 186
D+GS + K+ RGR PK + P +K LK KRGR
Sbjct: 115 DEGSEPIIKRKRGRPPKIKSSSPSTKLDDPLKPKRGR 151
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.6 bits (56), Expect = 0.54
Identities = 11/39 (28%), Positives = 15/39 (38%)
Frame = -2
Query: 248 TGACSSSEDLAESFVLVAAGGRPRFLSSFDSGCVPLAFG 132
TG C + F + G L F GC+ +FG
Sbjct: 628 TGVCIEETEKRPVFTMFGISGMGNHLQIFGGGCICFSFG 666
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 25.8 bits (54), Expect = 0.95
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 88 SDDGSTVVEKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAK 222
SD VV++K R + N + S ++K+G PAA TK +AK
Sbjct: 384 SDGIHLVVDEKSNFREE-NFQRAMSALMEKQGDDPAAMATKGNAK 427
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.0 bits (52), Expect = 1.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 140 PMEHNLSRKNLKNEVGLQLPPE 205
P E N++ +N+KNE +P E
Sbjct: 45 PFESNINIRNIKNEESYDIPNE 66
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 24.6 bits (51), Expect = 2.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 172 KKRGRPPAATRTKDSAKSSDDEQ 240
K+RGRPP + + DDE+
Sbjct: 21 KRRGRPPKGSYAAYGSSDDDDEE 43
>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 24.6 bits (51), Expect = 2.2
Identities = 12/35 (34%), Positives = 15/35 (42%)
Frame = +1
Query: 154 PESKELKKRGRPPAATRTKDSAKSSDDEQAPVAKR 258
P KEL R T S + SD+E P K+
Sbjct: 255 PNLKELIASSRKVVTKETASSKRKSDEESLPSQKK 289
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 24.2 bits (50), Expect = 2.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 176 FLSSFDSGCVPLAFGLPRPFFSTTVEPSSDIVH*IIYNVGI*LKLVYSKXCRYCRE 9
FL+ F V FG F S T+E +S + G L + Y+ C YC++
Sbjct: 12 FLACFS--LVSGVFGYSPMFGSNTIELNSKNFRKFVKAKGPSLVVFYAPWCGYCKK 65
>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 23.4 bits (48), Expect = 5.1
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 233 SSEDLAESFVLVAAGGRPRFL 171
SSEDL+ F+L +PRF+
Sbjct: 547 SSEDLSSKFMLAENALQPRFV 567
>SPAC6G10.07 |||nuclear cap-binding complex large subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 780
Score = 23.4 bits (48), Expect = 5.1
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +2
Query: 122 DAVDQKPMEHNLSRKNLKNE 181
DAVD++P E+N + + NE
Sbjct: 759 DAVDEQPSENNQTAADATNE 778
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 23.4 bits (48), Expect = 5.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 106 VVEKKGRGRPKANGTQPESKELKKRGRPPAAT 201
V EKK + K Q E+ E KK+G+ + T
Sbjct: 56 VHEKKDKKPEKRKKDQKEASEKKKKGKRTSPT 87
>SPCC1494.01 ||SPCC965.15|iron/ascorbate oxidoreductase
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 23.4 bits (48), Expect = 5.1
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = -2
Query: 143 LAFGLPRPFFSTTVEPSSDIVH*IIYNV 60
+ FG+P FFS + D++ + Y++
Sbjct: 143 IGFGIPPDFFSKSHSSEEDVLRLLKYSI 170
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 23.0 bits (47), Expect = 6.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 193 LEADLVF*VLSTQVVFHWLLVYRVLSF 113
+E D+ +S HWLLVY +LSF
Sbjct: 696 IEYDIALQPVSFHHPLHWLLVY-LLSF 721
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 133 PKANGTQPESKELKKRGRPPAATRTKDSAK 222
P + ++ +SK ++K PP DSAK
Sbjct: 69 PSSASSRSQSKYVRKEALPPQLFHHLDSAK 98
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 23.0 bits (47), Expect = 6.7
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 154 PESKELKKRGRPPAATRTKDSAKSSDDEQA 243
PESK+ RPP+ T ++ S D A
Sbjct: 167 PESKQTSDGHRPPSPTSITTTSTSIDPSVA 196
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +2
Query: 41 QVLAKYLHYKLFSELCLTTVQQLLKRKDAVDQKPMEHNLSRKNL 172
Q + LH K SEL L + + V+++P+ L NL
Sbjct: 469 QFIDSLLHIKTSSELYLPLANEFIPWSLEVEKQPVTTKLKVPNL 512
>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 591
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 145 GTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPVA 252
G Q ELKKR + A K ++ APVA
Sbjct: 23 GEQVSKTELKKREKQRARELAKAKKQAEKAASAPVA 58
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 115 KKGRGRPKANGTQPESKELKKRGRPPAATRTK 210
K+G+G +A T E + KK+ + A + K
Sbjct: 471 KQGKGNGRAKETPEEKRARKKKTKEDKAEKRK 502
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 139 ANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQAPV 249
+N + +++ RPPAA + +A +S + +PV
Sbjct: 181 SNAPPFNNTDVQASARPPAAGQDDSAADASTTKSSPV 217
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 249 YWCLFIIRRLSRIFCS 202
Y CLFI+ L I+CS
Sbjct: 127 YICLFILLLLGLIYCS 142
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 22.6 bits (46), Expect = 8.8
Identities = 9/25 (36%), Positives = 10/25 (40%)
Frame = -1
Query: 207 CSGGSWRPTSFFKFFRLRLCSIGFW 133
C W P F + L SI FW
Sbjct: 397 CGAYYWSPKMFGLMYNETLASIQFW 421
>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 424
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -2
Query: 152 CVPLAFGLPRPFF 114
C+P FG P P+F
Sbjct: 368 CLPAGFGSPIPYF 380
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 22.6 bits (46), Expect = 8.8
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +1
Query: 202 RTKDSAKSSDDEQAPVAKRG 261
+TK+S + S+D+ ++K+G
Sbjct: 71 KTKESLEKSNDDSQKISKKG 90
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 155 LSRKNLKNEVGLQLPPEQKI 214
L +KNLKN + L LP KI
Sbjct: 1432 LLQKNLKNPILLNLPISVKI 1451
>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 581
Score = 22.6 bits (46), Expect = 8.8
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Frame = -2
Query: 221 LAESFV-LVAAGGRPR---FLSSFDSGCVPLAFGLPRPFFSTTVEPSSD 87
+AE +V L GG P F + + C+ LAF + + + PS D
Sbjct: 495 MAEFYVSLFLIGGSPNANDFFQGYLAACIALAFFIGYKIYDRSHIPSLD 543
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 249 YWCLFIIRRLSRIFCS 202
Y CLF++ L I+CS
Sbjct: 127 YICLFVLLLLGLIYCS 142
>SPBC336.04 |cdc6|pol3, pold, mis10|DNA polymerase delta catalytic
subunit Cdc6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 22.6 bits (46), Expect = 8.8
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 112 EKKGRGRPKANGTQPESKELKKRGRPPAATRTKDSAKSSDDEQ 240
E+ G G K + ++ ++ + A+ +D KSS D+Q
Sbjct: 40 ERNGYGDKKGSSSKEKTSSFEDELAEYASQLDQDEIKSSKDQQ 82
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 22.6 bits (46), Expect = 8.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -1
Query: 198 GSWRPTSFFKFFRLRLCSIG 139
GSWR T+F R SIG
Sbjct: 244 GSWRHTNFHSTSHPRAASIG 263
>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
Length = 231
Score = 22.6 bits (46), Expect = 8.8
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +2
Query: 35 CKQVLAKYLHYKLFSELC--LTTVQQLLKRKDAVDQKPMEHNLSRKNLKNEVGLQLPPEQ 208
C ++ ++L K+ SEL L+ ++ + + + + + ++ L EV PPE+
Sbjct: 168 CSEI--EHLPSKVKSELQQKLSVMENSISKVEGICYSKILREADKRYLNLEVDTATPPEE 225
Query: 209 KILLS 223
K L S
Sbjct: 226 KRLRS 230
>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 22.6 bits (46), Expect = 8.8
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -1
Query: 249 YWCLFIIRRLSRIFCS 202
Y CLF++ L I+CS
Sbjct: 127 YICLFVLLLLGLIYCS 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,005,491
Number of Sequences: 5004
Number of extensions: 18230
Number of successful extensions: 93
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 51430850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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