Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k12
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.11 |vps55||vacuolar sorting protein Vps55 |Schizosacchar...    27   1.4  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    27   2.5  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    26   3.3  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    26   4.3  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   7.5  

>SPAC630.11 |vps55||vacuolar sorting protein Vps55
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 122

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -2

Query: 349 LPLLAARLFCKGWYPLFLFPTPSMV 275
           L +L+  LF K WYPL + P P+++
Sbjct: 20  LVILSCALF-KNWYPLLIAPLPNLL 43


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
 Frame = -1

Query: 257 TGC----YR-DHARIDSFIRTTVRTFSCHY 183
           TGC    YR  H +I     T V+ FSCHY
Sbjct: 58  TGCSKAFYRKSHLKIHKRCHTNVKPFSCHY 87


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 15/75 (20%), Positives = 30/75 (40%)
 Frame = +3

Query: 309 YHPLQKSLAANNGSQCGYCSPGWVMSMYSLLQQYKAPRMIEIEKLLGSNVCRCTGYRPIL 488
           Y    ++  +N    C    P W+    S  + +   + + IEKL   ++    G+ P L
Sbjct: 222 YSHRHETATSNKQVSCFREVPAWIKQCQSQCRGFLTRKCVSIEKLRRDDMSERLGWLPKL 281

Query: 489 DAFKSFAKDAPKNLI 533
           +   S   D  + ++
Sbjct: 282 ETKLSSISDEERLIL 296


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 RNKGYHPLQKSLAANNGSQCGYC 365
           R  GY+ +++SL   NG Q G C
Sbjct: 15  RINGYNNMRRSLLQRNGFQAGIC 37


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +3

Query: 147 KYMCRQAGCGACIVAAKRPDRRTNEAVNSCMVPITSCQNWEITTIE 284
           KY C    CG C      P R T    N   V     QN  I T E
Sbjct: 490 KYKCHLGSCGTCSETLTIPCRCT---ANEVQVTCEQLQNGFIPTCE 532


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,413,894
Number of Sequences: 5004
Number of extensions: 51723
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)