Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k12
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)           183   8e-47
SB_56571| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   6e-15
SB_15653| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)                 29   1.9  
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_4496| Best HMM Match : PAN (HMM E-Value=2.7)                        28   4.5  
SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)                 28   5.9  
SB_47935| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_34816| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)                  27   7.9  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)                       27   7.9  
SB_13579| Best HMM Match : Neur_chan_memb (HMM E-Value=0.00056)        27   7.9  

>SB_28550| Best HMM Match : Fer2_2 (HMM E-Value=2.49992e-42)
          Length = 1644

 Score =  183 bits (446), Expect = 8e-47
 Identities = 89/184 (48%), Positives = 120/184 (65%), Gaps = 4/184 (2%)
 Frame = +3

Query: 12  NLSQRSDMDRIQFKVNGCKYTVGNEVSSEVMLLDYLREYLQLRGTKYMCRQAGCGACIVA 191
           N   ++++  + F VNG +YTV N   +   L +++R    L+GTK MC++AGCG C+VA
Sbjct: 150 NSPPQAELKDLTFTVNGAQYTVHNP-DAHTSLNEWIRNQPGLKGTKVMCKEAGCGVCVVA 208

Query: 192 AKRPDRRTNE----AVNSCMVPITSCQNWEITTIEGVGNRNKGYHPLQKSLAANNGSQCG 359
             + D  T +    AVNSC+ P+ +     +TT EG+GNR KG+H +QK LA +NGSQCG
Sbjct: 209 VTKKDPTTGKDVTKAVNSCLFPLYAANESHVTTTEGIGNRKKGFHVIQKRLAEHNGSQCG 268

Query: 360 YCSPGWVMSMYSLLQQYKAPRMIEIEKLLGSNVCRCTGYRPILDAFKSFAKDAPKNLISD 539
           +CSPG VM+MYSLL++   P   +IE     N+CRCTGYRPILDA KSFA DA      D
Sbjct: 269 FCSPGMVMNMYSLLKEDPKPSKEKIEGSFDGNICRCTGYRPILDAMKSFAADASP---ID 325

Query: 540 IEDL 551
           IE+L
Sbjct: 326 IEEL 329


>SB_56571| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 32/65 (49%), Positives = 45/65 (69%)
 Frame = +3

Query: 321 QKSLAANNGSQCGYCSPGWVMSMYSLLQQYKAPRMIEIEKLLGSNVCRCTGYRPILDAFK 500
           ++ +A  +GSQCG+C+PG VMSMY+LL+    P   E+E     N+CRCTGYR ILD ++
Sbjct: 17  KERIANAHGSQCGFCTPGIVMSMYTLLRNNPLPSQKELESAFEGNLCRCTGYRAILDGYR 76

Query: 501 SFAKD 515
           +  KD
Sbjct: 77  TLTKD 81


>SB_15653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 364

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 352 WLPLLAARLFCKGWYPLFLF 293
           W+ L+    FC+G YPL+LF
Sbjct: 93  WITLVETLAFCRGIYPLYLF 112


>SB_58621| Best HMM Match : RVT_1 (HMM E-Value=1.5e-25)
          Length = 1238

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 279 IEGVGNRNKGYHPLQKSLAANNGSQCGYC-SPG-WVMSMYSLLQQYKAPR 422
           I+  GN    ++  QKSL   NG++C  C  P  W     S   Q  APR
Sbjct: 209 IQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGPAPR 258


>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 276 TIEGVGNRNKGYHPLQKSLAANNGSQCGYCSPGWVMSMYSL-LQQYKAPRMIEIEKLL 446
           +++ + + N+G H L+   A  NG    +  PG +   ++  +  YK P M +I K L
Sbjct: 179 SLQPINSWNEGGHNLRDRRATWNGDSLMWSKPGRIQVPHTFAVHSYKKPTMCQICKRL 236


>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4529

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/76 (25%), Positives = 28/76 (36%)
 Frame = +3

Query: 171  CGACIVAAKRPDRRTNEAVNSCMVPITSCQNWEITTIEGVGNRNKGYHPLQKSLAANNGS 350
            CG C      P       +N  M+    C  W   + +G+          +   AA+ G 
Sbjct: 871  CGPCASKTSCPVCNIKYNLNDLMIQCLHCDRWLHGSCDGLMTEE------EVDRAADYGY 924

Query: 351  QCGYCSPGWVMSMYSL 398
            QC YC P    S+ +L
Sbjct: 925  QCLYCRPKTKCSLGAL 940


>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 829

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 9/31 (29%), Positives = 21/31 (67%)
 Frame = -2

Query: 445 SSFSISIILGALYCCKRLYIDITHPGEQ*PH 353
           +SF ++I +G + C K++ ++I++  +  PH
Sbjct: 6   ASFLLTIYIGGIVCSKKVIVEISNSSDLLPH 36


>SB_4496| Best HMM Match : PAN (HMM E-Value=2.7)
          Length = 170

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 330 LAANNGSQCGYCSPGWVMSMYSLLQQYKAPRMIEIEKLLGSNVCRC 467
           +A  NG  C    P ++ S+Y+  QQ   P  + +     S+  RC
Sbjct: 71  VALTNGESCLTNEPNFITSLYACHQQRHPPHSLVLATYESSDEIRC 116


>SB_50978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 523

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 279 IEGVGNRNKGYHPLQKSLAANNGSQCGYC-SPG-WVMSMYSLLQQYKAPR 422
           I+  GN    ++  QKSL   NG++C  C  P  W     S   Q   PR
Sbjct: 222 IQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGPTPR 271


>SB_38746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 279 IEGVGNRNKGYHPLQKSLAANNGSQCGYC-SPG-WVMSMYSLLQQYKAPR 422
           I+  GN    ++  QKSL   NG++C  C  P  W     S   Q   PR
Sbjct: 48  IQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGPTPR 97


>SB_11912| Best HMM Match : RVT_1 (HMM E-Value=2.6e-26)
          Length = 1329

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = +3

Query: 279 IEGVGNRNKGYHPLQKSLAANNGSQCGYC-SPG-WVMSMYSLLQQYKAPR 422
           I+  GN    ++  QKSL   NG++C  C  P  W     S   Q   PR
Sbjct: 209 IQTCGNCGTSHNVTQKSLCPANGTKCSNCGKPNHWAKVCRSTKPQGPTPR 258


>SB_47935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 219 EAVNSCMVPITSCQNWEITTIEGV 290
           EA++ C VP  S ++WE+TT E V
Sbjct: 176 EAIDQC-VPPPSSEDWELTTKEAV 198


>SB_34816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 279 IEGVGNRNKGYHPLQKSLAAN 341
           + G G R +G+HPL++++ +N
Sbjct: 92  VNGRGRRRRGFHPLRRAVPSN 112


>SB_1228| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1157

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 183 IVAAKRPDRR-TNEAVNSCMVPITSCQNWEITTIEGVGNRNKGYHPLQKSLAANNGS 350
           +V A R DR+ T +AV +  + I+S   +EIT   GV   N     +  +++  NG+
Sbjct: 65  LVFAMRADRKDTAKAVENLHLDISSGNWYEITIYTGVWRNNGTTANVAATISGQNGA 121


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -1

Query: 308  SFIPISHSFYGCYFPILTGCYRDHARIDSFIRTTVRTFSCHYASTATGLTTHVLSS 141
            S  P+ +  Y C   +   CY    + D+    T+ +F C      TGLT  +L +
Sbjct: 4770 SSCPLGYQGYSCGEDV-DECYHMLCKNDALCINTLGSFKCDCKEGYTGLTCEILDN 4824


>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 890

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 293 SHSFYGCYFP--ILTGCYRDHARIDSFIRTTVRTFSCHYASTATG 165
           S+   GC F   I    +R +     F+RT +R  SC+++S  +G
Sbjct: 843 SYGLLGCVFAPKIFIIVFRPNKNTAEFVRTELRNKSCNHSSHYSG 887


>SB_13579| Best HMM Match : Neur_chan_memb (HMM E-Value=0.00056)
          Length = 194

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +3

Query: 279 IEGVGNRNKGYHPLQKSLAAN 341
           + G G R +G+HPL++++ +N
Sbjct: 150 VNGRGRRRRGFHPLRRAVPSN 170


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,107,821
Number of Sequences: 59808
Number of extensions: 396325
Number of successful extensions: 1004
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)