Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k11
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    28   1.4  
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro...    27   3.1  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    27   3.1  
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos...    27   3.1  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   5.5  
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom...    25   7.3  
SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.6  

>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = -2

Query: 324 SGLSRSPLLMIPNRKQPSLMIS 259
           SG+SR P+LM P+  +PSL ++
Sbjct: 369 SGMSRHPMLMNPSTPEPSLGVN 390


>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
           protein S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 503 DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 351
           DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 503 DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 351
           DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = -3

Query: 503 DPAERIDHVSRVSAVTNASNGFTDQVISRNEYATK-KQYGRCDPIVHTEHHV 351
           DP  +++   +++  TN    F     S     T  +  GR   IVH EHH+
Sbjct: 151 DPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHL 202


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 152 TLVYNFAPIVYYFIALFKMCHYSEAI 75
           TL+ N AP+V+ F +  K  HY+  +
Sbjct: 423 TLLLNIAPVVFIFASSTKEQHYASRL 448


>SPCC1183.06 |ung1||uracil DNA N-glycosylase
           Ung1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 322

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 204 KLNKHKWAVSTAPAKRSHVSL 142
           K NK KWA +  PA+R  + L
Sbjct: 57  KFNKEKWAENLTPAQRKLLQL 77


>SPBC405.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 23/73 (31%), Positives = 31/73 (42%)
 Frame = +3

Query: 270 GMAVFGLVSSVAGFVKVRYLIDKAVIDNMVFRMHYRITSAILFLCCILVTANNLIGEPIA 449
           G+  F L S+ AG +    LI  A I    F   Y    A+L    +LVT    +  P+A
Sbjct: 250 GVERFSLPSTTAGLI---VLIINASI---TFVSDYLWVIAMLMTSPLLVTVGMSLSIPLA 303

Query: 450 CISDGANPGHVIN 488
              D    GH +N
Sbjct: 304 LFFDILLKGHYLN 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,765,624
Number of Sequences: 5004
Number of extensions: 55978
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)