Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k11
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0496 + 16549333-16549465,16549620-16550020,16550412-165508...    28   5.7  
05_04_0318 - 20164582-20165031,20165346-20165659,20165767-20165935     28   7.5  
06_01_0877 + 6728883-6729651,6729989-6730224,6730423-6730704,673...    27   9.9  

>04_03_0496 + 16549333-16549465,16549620-16550020,16550412-16550880,
            16552038-16552076,16553151-16553272,16553531-16553677,
            16554097-16554186,16554274-16554398,16554567-16554772,
            16554951-16555075,16555528-16555722,16556295-16556337,
            16556762-16557267,16558198-16558570,16559772-16560062,
            16560132-16561101,16561196-16561892,16562378-16562658,
            16562731-16563400,16563860-16564034,16565103-16565659
          Length = 2204

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 475  DT*SIRSAGSRTHSPCRILHLKPQPILVSATTMMRNAYTLTINGYRSCCSS 627
            DT S    G   H  CR++H  P P+ + A+  +       I+  RSC ++
Sbjct: 1758 DTESSSVLGIPCHDLCRLMHFGPSPVKLIASQCLLELLN-RISDQRSCLNA 1807


>05_04_0318 - 20164582-20165031,20165346-20165659,20165767-20165935
          Length = 310

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +3

Query: 498 WITYTFTMPNTTSKTAAHPGLGDDNDEKRIHSYYQWVPFMLF 623
           WI + + + NT   TA+HP L        +    +WV   +F
Sbjct: 131 WIMHEYRLTNTGGSTASHPSLSSSTAHPSV-KLDEWVLCKIF 171


>06_01_0877 +
           6728883-6729651,6729989-6730224,6730423-6730704,
           6731297-6731335,6731719-6731826,6731873-6732220
          Length = 593

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 294 IPNRKQPSLMISLTILFSNLTVIRNFPVHLKLNKHKW 184
           + N +  S +IS  +L SNL++ RNF      + H W
Sbjct: 56  VQNPQNISQVISTELLASNLSITRNFSDRELQSLHSW 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,918,979
Number of Sequences: 37544
Number of extensions: 361901
Number of successful extensions: 892
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)