Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k11
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)                  31   0.83 
SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)                    29   3.3  

>SB_18845| Best HMM Match : Keratin_B2 (HMM E-Value=7)
          Length = 130

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = +1

Query: 511 HSPCRILHLKPQPILVSATTMMRNAYTLTINGYRSCCSSRAYF 639
           H PCRI H    P  +S    +   Y+LTI+    CC+ RA F
Sbjct: 5   HCPCRI-H---SPYTLSVFAALSVPYSLTIHAQSVCCTVRAVF 43



 Score = 31.1 bits (67), Expect = 0.83
 Identities = 18/43 (41%), Positives = 23/43 (53%)
 Frame = +1

Query: 511 HSPCRILHLKPQPILVSATTMMRNAYTLTINGYRSCCSSRAYF 639
           H PCRI H    P  +S    M   Y+LTI+  R C ++RA F
Sbjct: 54  HCPCRI-H---SPYTLSVFAAMSVPYSLTIHAQRVCGTARAVF 92


>SB_34014| Best HMM Match : MFS_1 (HMM E-Value=0.18)
          Length = 195

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +3

Query: 285 GLVSSVAGFVKVRYLIDKAVIDNMVFRMHYRITSAILFLCCILV 416
           G+V++ A    +   + +A+ID + +R  YRI  A+  + CILV
Sbjct: 151 GIVAAGASIGTLIGPVYQALIDGVGWRNSYRIIGALFSIACILV 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,369,463
Number of Sequences: 59808
Number of extensions: 437648
Number of successful extensions: 1053
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)