Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k11
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    26   0.28 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.5  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   2.6  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.9  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   7.8  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   7.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.8  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 478 CPGLAPSLMQAMGSPIRLLAVTSMQQRNSMADV 380
           CPG+A S    MGSP R L     +   S+  V
Sbjct: 204 CPGMALSQFDLMGSPYRNLTFVRREGEFSVLQV 236


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 550 WAAVLDVVFGMVNVYVIQQNVLI 482
           W  V  +V  +VNV V+  NVL+
Sbjct: 64  WILVTLIVLAIVNVMVVLGNVLV 86


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 444 IACISDGANPGHVINTFCWITYTFTMPNTTSKTAA 548
           +  ISD      + N + W    F  PN  +K AA
Sbjct: 12  LLAISDSQAQEKLKNIYSWKALEFAFPNGYAKLAA 46


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 91  IIVKRFVVTSSECVPAAHDTPAA 23
           II KR+V+T++ C+   + T  A
Sbjct: 192 IISKRYVLTAAHCIIDENTTKLA 214


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 480 VINTFCWITYTFTMPNTTSKTAA 548
           ++  F W T  +  P+  SKT A
Sbjct: 34  LLERFFWRTLDYAYPDEASKTMA 56


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 617 HERYPLIVRVYAFLIIVVAETRMGCGFRCSIR 522
           +E   +I  +   LII+V  TRMG   R S +
Sbjct: 213 YELSTIIFFLIPMLIILVVYTRMGLKIRNSTK 244


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 497 LDHVHIHHAEYY 532
           LD+ H+HHA ++
Sbjct: 276 LDNHHVHHANHH 287


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +3

Query: 420 ANNLIGEPIACISDGANPGHVINTFCWITYTFTMPNTTSKT 542
           + + + E I C       G    TFC   Y   +    SKT
Sbjct: 433 SESCLPEEILCPHFNVTDGETTKTFCCKGYCMDLLKELSKT 473


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,687
Number of Sequences: 438
Number of extensions: 3607
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)