Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k11
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR ...    29   3.6  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    28   4.8  
At5g01550.1 68418.m00070 lectin protein kinase, putative similar...    28   6.3  
At3g16180.1 68416.m02043 proton-dependent oligopeptide transport...    28   6.3  
At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1) (...    27   8.3  

>At1g62630.1 68414.m07066 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 893

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
 Frame = +3

Query: 402 CCILVTANNLIGEPIAC---ISDGANPGHVINTF 494
           CC L  A N+IGE ++C   I +  N  HV+N++
Sbjct: 344 CCGLPLALNVIGETMSCKRTIQEWRNAIHVLNSY 377


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 450 CISDGANPGHVINTFCWITYTFTMPNTTSKTAAHPGLGDDNDEKRIHSYYQWVP 611
           C+   ++PG   N   ++ Y F + + T+KT       DDN  +++   Y W P
Sbjct: 328 CVPASSSPGLKPNCIYFVGYNFGVYDLTTKTCTMFLTKDDNPLRKLEFPY-WPP 380


>At5g01550.1 68418.m00070 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 688

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 203 NLTNTSGQCPQHQQNDLTLVYNFAP 129
           NL N  G C Q  +NDL L+Y++ P
Sbjct: 418 NLVNLQGWCKQ--KNDLLLIYDYIP 440


>At3g16180.1 68416.m02043 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 591

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 564 DDNDEKRIHSYYQWVPFMLFFQGLLFYI 647
           +DN  K  + YY WV  +L F  +++Y+
Sbjct: 532 EDNINKGHYDYYYWVLAILSFVNVIYYV 559


>At1g12110.1 68414.m01402 nitrate/chlorate transporter (NRT1.1)
           (CHL1) identical to nitrate/chlorate transporter
           SP:Q05085 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00854 POT family
          Length = 590

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +3

Query: 546 AHPGLGDDNDEKRIHSYYQWVPFMLFFQGLLFYI 647
           AHP + DD ++ R++++Y  V  ++    L+F +
Sbjct: 528 AHPWIADDLNKGRLYNFYWLVAVLVALNFLIFLV 561


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,415,642
Number of Sequences: 28952
Number of extensions: 294240
Number of successful extensions: 692
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)