Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k10
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   5.6  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   9.8  

>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 442 LVCYSRQTCDHHAEGYSTCSTNP 510
           L+   R + D     +STCS++P
Sbjct: 102 LMAILRMSADGGCRNFSTCSSHP 124


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +1

Query: 442 LVCYSRQTCDHHAEGYSTCSTNP 510
           L+   R + D     +STCS++P
Sbjct: 101 LMAILRMSADGGCRNFSTCSSHP 123


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 589 NISET*KSYRITSNQNYN*TNLSTFTTDSSSKLNILRHD 473
           N ++T K Y I+SN   + +     T+   S+   LRH+
Sbjct: 202 NETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRHE 240


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,693
Number of Sequences: 438
Number of extensions: 3079
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)