Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k09
(590 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q24317 Cluster: DNA primase small subunit; n=4; Diptera... 223 2e-57
UniRef50_UPI0000D5718D Cluster: PREDICTED: similar to CG7108-PA;... 218 7e-56
UniRef50_UPI00015B4B16 Cluster: PREDICTED: similar to DNA primas... 217 1e-55
UniRef50_UPI0000DB77C6 Cluster: PREDICTED: similar to primase po... 212 5e-54
UniRef50_P49642 Cluster: DNA primase small subunit; n=34; Eumeta... 193 3e-48
UniRef50_A7QN91 Cluster: Chromosome chr2 scaffold_132, whole gen... 186 3e-46
UniRef50_P34471 Cluster: DNA primase small subunit; n=3; Caenorh... 184 1e-45
UniRef50_Q24HY6 Cluster: DNA primase, eukaryotic-type, small sub... 184 1e-45
UniRef50_Q675Q4 Cluster: DNA primase; n=1; Oikopleura dioica|Rep... 178 7e-44
UniRef50_Q8MWR9 Cluster: DNA primase; n=1; Moneuplotes crassus|R... 175 6e-43
UniRef50_O14215 Cluster: DNA primase small subunit; n=19; Ascomy... 169 6e-41
UniRef50_Q9FJ26 Cluster: DNA primase; n=1; Arabidopsis thaliana|... 167 1e-40
UniRef50_Q4P979 Cluster: DNA primase; n=1; Ustilago maydis|Rep: ... 162 5e-39
UniRef50_A5DB56 Cluster: DNA primase; n=5; Saccharomycetales|Rep... 161 1e-38
UniRef50_Q5CQA3 Cluster: DNA primase; n=3; Cryptosporidium|Rep: ... 161 1e-38
UniRef50_Q5KH10 Cluster: DNA primase; n=4; Agaricomycotina|Rep: ... 158 1e-37
UniRef50_Q6CF04 Cluster: DNA primase; n=1; Yarrowia lipolytica|R... 157 2e-37
UniRef50_P10363 Cluster: DNA primase small subunit; n=6; Sacchar... 156 3e-37
UniRef50_Q4UFH5 Cluster: DNA primase small subunit, putative; n=... 155 7e-37
UniRef50_Q7KQM1 Cluster: DNA primase small subunit; n=12; Plasmo... 153 4e-36
UniRef50_Q00WX0 Cluster: DNA primase; n=2; Ostreococcus|Rep: DNA... 150 2e-35
UniRef50_Q4QBV6 Cluster: DNA primase small subunit, putative; n=... 144 1e-33
UniRef50_UPI000049921B Cluster: DNA primase small subunit; n=2; ... 140 3e-32
UniRef50_A0EG74 Cluster: DNA primase; n=1; Paramecium tetraureli... 134 2e-30
UniRef50_Q8SRD5 Cluster: DNA primase; n=1; Encephalitozoon cunic... 133 3e-30
UniRef50_A2G330 Cluster: DNA primase; n=1; Trichomonas vaginalis... 126 4e-28
UniRef50_Q54MM7 Cluster: DNA primase; n=1; Dictyostelium discoid... 122 8e-27
UniRef50_UPI00004983C2 Cluster: DNA primase small subunit; n=1; ... 113 4e-24
UniRef50_Q7QRZ8 Cluster: DNA primase; n=1; Giardia lamblia ATCC ... 108 1e-22
UniRef50_A2Y3N8 Cluster: DNA primase; n=4; Oryza sativa|Rep: DNA... 73 7e-12
UniRef50_UPI000155BA73 Cluster: PREDICTED: similar to hCG2016482... 62 1e-08
UniRef50_UPI000155BDB7 Cluster: PREDICTED: similar to retinol de... 58 1e-07
UniRef50_O29516 Cluster: Probable DNA primase small subunit; n=2... 55 1e-06
UniRef50_A3DM85 Cluster: DNA primase; n=1; Staphylothermus marin... 52 1e-05
UniRef50_Q0W8M0 Cluster: DNA primase, small subunit; n=2; Archae... 50 4e-05
UniRef50_Q6L0W5 Cluster: Probable DNA primase small subunit; n=2... 50 5e-05
UniRef50_Q9YEZ8 Cluster: Probable DNA primase small subunit; n=1... 49 9e-05
UniRef50_Q8ZTY1 Cluster: Probable DNA primase small subunit; n=4... 48 2e-04
UniRef50_Q979L5 Cluster: Probable DNA primase small subunit; n=4... 48 2e-04
UniRef50_Q9HPU3 Cluster: Probable DNA primase small subunit; n=6... 48 2e-04
UniRef50_A1RXU6 Cluster: DNA primase; n=1; Thermofilum pendens H... 47 3e-04
UniRef50_Q2FPD1 Cluster: DNA primase; n=2; Methanomicrobiales|Re... 46 5e-04
UniRef50_Q58249 Cluster: DNA primase; n=6; Methanococcales|Rep: ... 44 0.004
UniRef50_A3CX73 Cluster: DNA primase; n=2; Methanomicrobiales|Re... 43 0.006
UniRef50_Q9P9H1 Cluster: DNA primase small subunit; n=5; Thermoc... 41 0.019
UniRef50_A0B688 Cluster: DNA primase; n=1; Methanosaeta thermoph... 41 0.025
UniRef50_Q8PVZ4 Cluster: Probable DNA primase small subunit; n=4... 40 0.033
UniRef50_Q8WTP4 Cluster: Phosphatidylinositol phosphate kinase 6... 38 0.18
UniRef50_A7DQM5 Cluster: DNA primase, small subunit; n=1; Candid... 37 0.31
UniRef50_Q8F7A1 Cluster: Diaminopimelate decarboxylase; n=7; cel... 36 0.94
UniRef50_A2A9Q9 Cluster: Novel protein simlar to melanoma antige... 35 1.6
UniRef50_A0RYW9 Cluster: Eukaryotic-type DNA primase, catalytic ... 32 8.7
>UniRef50_Q24317 Cluster: DNA primase small subunit; n=4;
Diptera|Rep: DNA primase small subunit - Drosophila
melanogaster (Fruit fly)
Length = 438
Score = 223 bits (546), Expect = 2e-57
Identities = 101/185 (54%), Positives = 130/185 (70%), Gaps = 4/185 (2%)
Frame = +2
Query: 41 HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQ 217
+N +L DMLP YY R FP F RWL+ GSS + NRE+SFTL DD+Y+RYL Q
Sbjct: 23 YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82
Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 388
+L+ + + P K+D+G V ++KP R + RELVFDID+TDYDE+RTCC
Sbjct: 83 AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142
Query: 389 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 568
A VC KCWKFMV+A ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+AR LD GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202
Query: 569 IADYL 583
+A+YL
Sbjct: 203 VAEYL 207
>UniRef50_UPI0000D5718D Cluster: PREDICTED: similar to CG7108-PA;
n=1; Tribolium castaneum|Rep: PREDICTED: similar to
CG7108-PA - Tribolium castaneum
Length = 422
Score = 218 bits (533), Expect = 7e-56
Identities = 101/189 (53%), Positives = 131/189 (69%), Gaps = 6/189 (3%)
Frame = +2
Query: 41 HNENILSDMLPTYYARQFPQNIFCRWLACGS---SPQPLCNRELSFTLADDVYLRYLSIS 211
+NE+ L D+LP YY R FP +WL G+ P RE+SFTL D+YLRY S
Sbjct: 6 YNEDSLPDLLPIYYKRLFPHTALHKWLCYGNPSGDPNVSNRREISFTLVGDIYLRYQSFE 65
Query: 212 HQKDLQTLLQKKCPHKLDVGAVYNTK-PSVGRHDA--VVISRELVFDIDLTDYDEIRTCC 382
+ +D L K+ P K+D+GA+Y + S G + + + RE+VFDID+TDYD++RTCC
Sbjct: 66 NAEDFAQALHKRFPVKIDIGAIYKQRLESSGSYSSSKTPVEREIVFDIDMTDYDDVRTCC 125
Query: 383 QEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGR 562
A VC KCWKFMVIAC+I+D AL++DFGF++ILWVFSGRRGIHCWV+D +AR LD R
Sbjct: 126 TGAGVCPKCWKFMVIACKILDGALREDFGFENILWVFSGRRGIHCWVADKKARILDDNQR 185
Query: 563 GAIADYLCL 589
AIA+YL L
Sbjct: 186 SAIAEYLTL 194
>UniRef50_UPI00015B4B16 Cluster: PREDICTED: similar to DNA primase;
n=2; Nasonia vitripennis|Rep: PREDICTED: similar to DNA
primase - Nasonia vitripennis
Length = 458
Score = 217 bits (531), Expect = 1e-55
Identities = 102/184 (55%), Positives = 130/184 (70%), Gaps = 2/184 (1%)
Frame = +2
Query: 44 NENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKD 223
+E+ LSD+LP YY+R FP + RWL+ G + RE SFTL DD+Y+R+ S + D
Sbjct: 47 DESNLSDLLPLYYSRLFPYIDYYRWLSYGEA-STFSRREFSFTLRDDIYIRFQSFNKIDD 105
Query: 224 LQTLLQKKCPHKLDVGAVYNTKPS-VGRHDAVV-ISRELVFDIDLTDYDEIRTCCQEARV 397
L+ +++ CPHK+D+GAVYN PS GR I RE+V DID+TDYDE+R+CC A V
Sbjct: 106 LKNEIKRLCPHKIDIGAVYNVAPSNKGREIKFEPIQREVVIDIDMTDYDEVRSCCSGADV 165
Query: 398 CEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIAD 577
C KCWK+MV+A +I+D AL+DDFGF ILWVFSGRRGIHCWV D +AR L GR A+A
Sbjct: 166 CNKCWKYMVLAVKILDVALRDDFGFDHILWVFSGRRGIHCWVCDKKARFLTQNGRKAVAH 225
Query: 578 YLCL 589
YL L
Sbjct: 226 YLQL 229
>UniRef50_UPI0000DB77C6 Cluster: PREDICTED: similar to primase
polypeptide 1; n=1; Apis mellifera|Rep: PREDICTED:
similar to primase polypeptide 1 - Apis mellifera
Length = 674
Score = 212 bits (518), Expect = 5e-54
Identities = 101/185 (54%), Positives = 129/185 (69%), Gaps = 3/185 (1%)
Frame = +2
Query: 38 EHNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQ 217
E EN L D+LPTYYAR FP + + RWL+ G+ NRE SFTL DVY+R+ S +
Sbjct: 2 EELEN-LGDLLPTYYARLFPFHDYYRWLSYGNV-NTFNNREFSFTLQGDVYIRFQSFKNV 59
Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAV---VISRELVFDIDLTDYDEIRTCCQE 388
K+L+ +++ P K+DVGAVYN P + + +ELVFDID+TDYDEIRTCC
Sbjct: 60 KELELQIRRLLPVKIDVGAVYNYSPKEQKMRGTNFHPVEKELVFDIDMTDYDEIRTCCSG 119
Query: 389 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 568
A +C CWKFM +AC+I+D AL+ DFG++ ILWVFSGRRGIHCWV D ARTL + RGA
Sbjct: 120 ADICASCWKFMALACKILDTALRSDFGYKHILWVFSGRRGIHCWVCDPCARTLTARERGA 179
Query: 569 IADYL 583
+A+YL
Sbjct: 180 VAEYL 184
>UniRef50_P49642 Cluster: DNA primase small subunit; n=34;
Eumetazoa|Rep: DNA primase small subunit - Homo sapiens
(Human)
Length = 420
Score = 193 bits (470), Expect = 3e-48
Identities = 90/185 (48%), Positives = 123/185 (66%), Gaps = 7/185 (3%)
Frame = +2
Query: 56 LSDMLPTYYARQFPQNIFCRWLACGSSPQPLC-NRELSFTLADDVYLRYLSISHQKDLQT 232
L ++L YY R FP + + RWL G + +RE SFTL DD+Y+RY S ++Q DL+
Sbjct: 9 LPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEK 68
Query: 233 LLQKKCPHKLDVGAVYNTKPSVGRHDAVVIS------RELVFDIDLTDYDEIRTCCQEAR 394
+QK P+K+D+GAVY+ +P+ +H+ V + +ELVFDID+TDYD++R CC A
Sbjct: 69 EMQKMNPYKIDIGAVYSHRPN--QHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSAD 126
Query: 395 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 574
+C KCW M +A IID+ALK+DFGF+ LWV+SGRRG+HCWV D R L S R I
Sbjct: 127 ICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIV 186
Query: 575 DYLCL 589
+YL L
Sbjct: 187 EYLSL 191
>UniRef50_A7QN91 Cluster: Chromosome chr2 scaffold_132, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr2 scaffold_132, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 457
Score = 186 bits (453), Expect = 3e-46
Identities = 89/189 (47%), Positives = 123/189 (65%), Gaps = 15/189 (7%)
Frame = +2
Query: 59 SDMLPTYYARQFPQNIFCRWLACGSSPQ-PLCN------RELSFTLADDVYLRYLSISHQ 217
++ L YY + FP + +W++ G+ + P C+ RE SFTLADD+YLR+ S +
Sbjct: 35 ANYLKVYYGKLFPHSDLFKWMSYGNDGKHPACDQSYIGRREFSFTLADDIYLRFQSFNSV 94
Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH------DAVV--ISRELVFDIDLTDYDEIR 373
+++ +++KCP K+D+G VY+ P+ RH D V + RELVFDID+TDYD++R
Sbjct: 95 HEMENSIKEKCPFKIDIGPVYSVDPTK-RHAYAQSGDNVFTPVERELVFDIDITDYDDVR 153
Query: 374 TCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDS 553
CC A VC CW M +A ++ID AL+DDFGF ILWV+SGRRG+HCWV D AR L +
Sbjct: 154 YCCSGADVCLDCWPLMTVAIKVIDTALRDDFGFNHILWVYSGRRGVHCWVCDGRARRLSN 213
Query: 554 PGRGAIADY 580
R AIADY
Sbjct: 214 EQRAAIADY 222
>UniRef50_P34471 Cluster: DNA primase small subunit; n=3;
Caenorhabditis|Rep: DNA primase small subunit -
Caenorhabditis elegans
Length = 410
Score = 184 bits (449), Expect = 1e-45
Identities = 93/186 (50%), Positives = 119/186 (63%), Gaps = 3/186 (1%)
Frame = +2
Query: 41 HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQ 217
+N L LP YY FP F +WL G + NR E +F LADDV++RY S + +
Sbjct: 3 YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62
Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKP-SVGRH-DAVVISRELVFDIDLTDYDEIRTCCQEA 391
L P KLD+GAVYN +P + RH D + RELVFDIDLTDYD +R CC++A
Sbjct: 63 HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122
Query: 392 RVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAI 571
VC KCWKFMV+A +I+D L+D F F++ +WVFSGRRG+HCWV D +AR L++ R AI
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182
Query: 572 ADYLCL 589
A L L
Sbjct: 183 ATRLNL 188
>UniRef50_Q24HY6 Cluster: DNA primase, eukaryotic-type, small
subunit, putative family protein; n=1; Tetrahymena
thermophila SB210|Rep: DNA primase, eukaryotic-type,
small subunit, putative family protein - Tetrahymena
thermophila SB210
Length = 399
Score = 184 bits (448), Expect = 1e-45
Identities = 83/176 (47%), Positives = 113/176 (64%), Gaps = 2/176 (1%)
Frame = +2
Query: 62 DMLPTYYARQFPQNIFCRWLACGSSPQP--LCNRELSFTLADDVYLRYLSISHQKDLQTL 235
D+L YY FP + +WL+ RE SFTL ++VYLRY + +++ +
Sbjct: 21 DLLEEYYRSYFPVSQMVQWLSYPQDGDDTYFTRREFSFTLQNEVYLRYQMYNSEREFKNA 80
Query: 236 LQKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWK 415
L +K P K+D+GAVY+ +P D +E V DID+TDYD IRTCC +A++CEKCWK
Sbjct: 81 LLQKVPEKIDIGAVYD-RPGKKGDDIKAKEKEFVIDIDMTDYDHIRTCCSKAKICEKCWK 139
Query: 416 FMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
FM +AC++I K+L +DFGFQ +LWV+SGRRGIH WV D E R + R +I DYL
Sbjct: 140 FMRVACDLISKSLDEDFGFQHVLWVYSGRRGIHAWVCDKEIRKANDYTRASIIDYL 195
>UniRef50_Q675Q4 Cluster: DNA primase; n=1; Oikopleura dioica|Rep:
DNA primase - Oikopleura dioica (Tunicate)
Length = 391
Score = 178 bits (434), Expect = 7e-44
Identities = 84/177 (47%), Positives = 114/177 (64%), Gaps = 1/177 (0%)
Frame = +2
Query: 53 ILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQT 232
+ ++L +YY FP + F WL + + L RE SFTL DDVY R+ S + +++L
Sbjct: 15 VSEEVLSSYYKEYFPLDPFIEWLGYRND-ETLSRREFSFTLKDDVYTRFRSFTSKEELHQ 73
Query: 233 LLQKKCPHKLDVGAVYNTKPSVGRH-DAVVISRELVFDIDLTDYDEIRTCCQEARVCEKC 409
K P K+D+GA+YN D RELVFDID++DYD++RTCCQEAR+C+KC
Sbjct: 74 AFIKTKPEKIDIGAIYNYSCKHRLSPDFKEEQRELVFDIDISDYDDVRTCCQEARICQKC 133
Query: 410 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADY 580
W M I +++++ LK FGF+ IL+VFSGRRGIHCWV D EAR L+ R A+A Y
Sbjct: 134 WPLMSICVKVLEETLKTAFGFEQILFVFSGRRGIHCWVFDEEARKLNGAERFALAHY 190
>UniRef50_Q8MWR9 Cluster: DNA primase; n=1; Moneuplotes crassus|Rep:
DNA primase - Euplotes crassus
Length = 441
Score = 175 bits (426), Expect = 6e-43
Identities = 77/147 (52%), Positives = 105/147 (71%), Gaps = 4/147 (2%)
Frame = +2
Query: 155 RELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKP----SVGRHDAVVI 322
RE SFTL D +Y+RY ++++ + L +K P K+D+GAV+N P SV +
Sbjct: 59 REFSFTLEDGIYVRYNCFKNEEEFKQTLIEKSPEKIDIGAVFNMPPKNHSSVESRAFIPQ 118
Query: 323 SRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGR 502
+ELVFDID+TDYD++RTCC+ A VC KCW+FM IA +IIDKA+++DFG++ +LWVFSGR
Sbjct: 119 EKELVFDIDMTDYDDVRTCCEGANVCLKCWRFMSIATKIIDKAMREDFGYKHLLWVFSGR 178
Query: 503 RGIHCWVSDYEARTLDSPGRGAIADYL 583
RG+HCWV D R L + R AIA+YL
Sbjct: 179 RGVHCWVCDPSTRKLTNEARSAIANYL 205
>UniRef50_O14215 Cluster: DNA primase small subunit; n=19;
Ascomycota|Rep: DNA primase small subunit -
Schizosaccharomyces pombe (Fission yeast)
Length = 454
Score = 169 bits (410), Expect = 6e-41
Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 5/180 (2%)
Frame = +2
Query: 59 SDMLPTYYARQFPQNIFCRWLACGSS-PQPLCNRELSFTLADDVYLRYLSISHQKDLQTL 235
S+ + YY FP +WL G +RE +FTL +D Y+RYLS S+ ++L+
Sbjct: 32 SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91
Query: 236 LQKKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 403
CP + +VG VY+ P ++ + + +ELVFDID+TDYD++RTCC + +CE
Sbjct: 92 ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151
Query: 404 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
KCW F+ IA +++D +DFGF+ ILWV+SGRRGIH W+ D A +LD R IA YL
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211
>UniRef50_Q9FJ26 Cluster: DNA primase; n=1; Arabidopsis
thaliana|Rep: DNA primase - Arabidopsis thaliana
(Mouse-ear cress)
Length = 407
Score = 167 bits (407), Expect = 1e-40
Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 7/149 (4%)
Frame = +2
Query: 155 RELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSV-------GRHDA 313
RE SFTL +DVYLRY S + ++ ++ P+K+D+GAVY+ P G +
Sbjct: 50 REFSFTLENDVYLRYKSFKNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLF 109
Query: 314 VVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVF 493
+ RELVFDID+TDYD++R CC A VC KCW M +A ++ID +L++DFGF+ ILWVF
Sbjct: 110 TPVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIKVIDTSLREDFGFKHILWVF 169
Query: 494 SGRRGIHCWVSDYEARTLDSPGRGAIADY 580
SGRRG+HCWV D +AR L + R A+A+Y
Sbjct: 170 SGRRGVHCWVCDAKARRLTNEQRSAVAEY 198
>UniRef50_Q4P979 Cluster: DNA primase; n=1; Ustilago maydis|Rep: DNA
primase - Ustilago maydis (Smut fungus)
Length = 492
Score = 162 bits (394), Expect = 5e-39
Identities = 76/178 (42%), Positives = 112/178 (62%), Gaps = 8/178 (4%)
Frame = +2
Query: 74 TYYARQFPQNIFCRWL----ACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQ 241
++Y R FP WL A ++ + +RE +FTL ++ YLRY S S +L+ +
Sbjct: 55 SFYRRLFPWKQLFSWLNHDLAHMAATKCFTHREFAFTLQNEAYLRYNSFSSADELKKEVC 114
Query: 242 KKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKC 409
+ P + ++G VY KP +V + + RELVFDID+TDYDE+RTCC +C++C
Sbjct: 115 RLNPARFEIGPVYTAKPKDRKTVQKASFKPVQRELVFDIDMTDYDEVRTCCSGKGICKRC 174
Query: 410 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
W F+ +A +++D+AL+ DFGF+ +LWV+SGRRGIHCW+SD EA L R AI +L
Sbjct: 175 WAFIAVAVQVLDEALRQDFGFKHLLWVYSGRRGIHCWISDKEAFQLADDARKAIVGWL 232
>UniRef50_A5DB56 Cluster: DNA primase; n=5; Saccharomycetales|Rep:
DNA primase - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 464
Score = 161 bits (391), Expect = 1e-38
Identities = 78/180 (43%), Positives = 110/180 (61%), Gaps = 5/180 (2%)
Frame = +2
Query: 59 SDMLPTYYARQFPQNIFCRWLACGSSP-QPLCNRELSFTLADDVYLRYLSISHQKDLQTL 235
SDML +Y R P +WL P + RE ++ Y RY S S+ ++ +
Sbjct: 25 SDML-FFYQRLLPFRQIFQWLNHSPKPSKDFTMREFAYEYRTGAYQRYNSFSNLEEFKKS 83
Query: 236 LQKKCPHKLDVGAVYNTKPS----VGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 403
+ + P + +VGAVY+ P + + +++ELVFDIDLTDYDEIRTCC +C+
Sbjct: 84 VVQANPTRFEVGAVYSVNPKERKRLPKQALKPLAKELVFDIDLTDYDEIRTCCSGTDICK 143
Query: 404 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
KCW+F+ +A +I+D AL++DFGF ++WVFSGRRG HCWVSD AR LD R +I +YL
Sbjct: 144 KCWRFIQVAIKILDAALREDFGFNRLIWVFSGRRGAHCWVSDARARCLDETTRKSIVEYL 203
>UniRef50_Q5CQA3 Cluster: DNA primase; n=3; Cryptosporidium|Rep: DNA
primase - Cryptosporidium parvum Iowa II
Length = 402
Score = 161 bits (390), Expect = 1e-38
Identities = 73/154 (47%), Positives = 100/154 (64%), Gaps = 8/154 (5%)
Frame = +2
Query: 152 NRELSFTLA-----DDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYN---TKPSVGRH 307
NRE S T+ D++YLR+ L+ + + PHK D+GA+YN ++ +
Sbjct: 22 NREFSMTIKSEIDQDEIYLRWQHFKTIDQLKQEIVARTPHKFDIGAIYNIPISEKEISPL 81
Query: 308 DAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILW 487
+ RELVFDID+ DYD+IRTCCQE +CEKCW ++ +A +ID +L+ DFGF+ ILW
Sbjct: 82 GFKPVQRELVFDIDMNDYDDIRTCCQEKTICEKCWLYVTVAIRLIDTSLRQDFGFKHILW 141
Query: 488 VFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
++SGRRG+HCWV D +AR L S R AI DYL L
Sbjct: 142 LYSGRRGVHCWVCDTKARLLPSEARTAIIDYLTL 175
>UniRef50_Q5KH10 Cluster: DNA primase; n=4; Agaricomycotina|Rep: DNA
primase - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 429
Score = 158 bits (383), Expect = 1e-37
Identities = 73/178 (41%), Positives = 108/178 (60%), Gaps = 5/178 (2%)
Frame = +2
Query: 65 MLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQKDLQTLLQ 241
++ +Y R FP WL P L +RE +FTLA DVYLRY S ++ + + +
Sbjct: 20 VMQLFYRRLFPYRPLYLWLNQEQIPSKLFTHREFAFTLAGDVYLRYQSFNNVDEFKASIA 79
Query: 242 KKCPHKLDVGAVYNTKPSVGRHDAVVI----SRELVFDIDLTDYDEIRTCCQEARVCEKC 409
+ P + ++G Y+ +P + A RELVFDID+TDYDEIRTCC + +C++C
Sbjct: 80 RHIPSRFEIGPQYSARPKDRKTLASGALQPQRRELVFDIDMTDYDEIRTCCTDKTICKRC 139
Query: 410 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
W F+ A +++D +L++ FGF+ +LWV+SGRRGIHCW+SD A L R A+ +L
Sbjct: 140 WGFIAAAVKVLDHSLRETFGFKHLLWVYSGRRGIHCWISDQSALDLTDDQRRALVTFL 197
>UniRef50_Q6CF04 Cluster: DNA primase; n=1; Yarrowia lipolytica|Rep:
DNA primase - Yarrowia lipolytica (Candida lipolytica)
Length = 441
Score = 157 bits (380), Expect = 2e-37
Identities = 72/177 (40%), Positives = 110/177 (62%), Gaps = 5/177 (2%)
Frame = +2
Query: 68 LPTYYARQFPQNIFCRWLACGS-SPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQK 244
L +Y+R FP RWL + + RE +FTL + YLR+ S + +++ ++ +
Sbjct: 35 LGLFYSRFFPFKTLHRWLNHSPRNGRDFAYREFAFTLRNGAYLRFNSFAEEREFKSRVDD 94
Query: 245 KCPHKLDVGAVYNTKPSVG---RHDAVV-ISRELVFDIDLTDYDEIRTCCQEARVCEKCW 412
P + ++GAVY+ P R D +S+ELVFDID+ DYD+ RTCC A VC KCW
Sbjct: 95 LVPERFEIGAVYSHSPKDRKKLRKDVFKPVSKELVFDIDMDDYDKFRTCCSGASVCNKCW 154
Query: 413 KFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
+++ +A ++++ ALK+DFG++ I+WVFSGRRG H WVSD +AR L+ R + Y+
Sbjct: 155 RYVQVAVKMVNSALKEDFGYKHIMWVFSGRRGAHAWVSDKKARDLNDRQRSTVVSYI 211
>UniRef50_P10363 Cluster: DNA primase small subunit; n=6;
Saccharomycetales|Rep: DNA primase small subunit -
Saccharomyces cerevisiae (Baker's yeast)
Length = 409
Score = 156 bits (379), Expect = 3e-37
Identities = 73/180 (40%), Positives = 105/180 (58%), Gaps = 5/180 (2%)
Frame = +2
Query: 59 SDMLPTYYARQFPQNIFCRWLACGSSP-QPLCNRELSFTLADDVYLRYLSISHQKDLQTL 235
SDM YY +P WL P + + NRE + Y RY S + +D +
Sbjct: 13 SDM-EYYYKSLYPFKHIFNWLNHSPKPSRDMINREFAMAFRSGAYKRYNSFNSVQDFKAQ 71
Query: 236 LQKKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 403
++K P + ++GA+YN P ++ + + + +ELVFDID+ DYD RTCC A+VC
Sbjct: 72 IEKANPDRFEIGAIYNKPPRERDTLLKSELKALEKELVFDIDMDDYDAFRTCCSGAQVCS 131
Query: 404 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
KCWKF+ +A +I + AL++DFG++ +WVFSGRRG HCWVSD AR L R + DY+
Sbjct: 132 KCWKFISLAMKITNTALREDFGYKDFIWVFSGRRGAHCWVSDKRARALTDVQRRNVLDYV 191
>UniRef50_Q4UFH5 Cluster: DNA primase small subunit, putative; n=3;
Piroplasmida|Rep: DNA primase small subunit, putative -
Theileria annulata
Length = 397
Score = 155 bits (376), Expect = 7e-37
Identities = 81/182 (44%), Positives = 110/182 (60%), Gaps = 11/182 (6%)
Frame = +2
Query: 77 YYARQFPQNIFCRWLACGSSPQPLCNRELSFTL-------ADDVYLRYLSI-SHQKDLQT 232
YY P RW+ P L RE+S TL A ++YLR+ + S + +T
Sbjct: 17 YYKNFCPIKDLVRWIGY-EDPSILKRREISLTLHRGDTTNATEIYLRWQTFESFESVFET 75
Query: 233 LLQK-KCPHKLDVGAVYNTKPSVGR--HDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 403
L P K D+GA+Y+ K S+ + D + RE+VFDID+ DYDE RTCC + +VC
Sbjct: 76 LCNSDSVPFKFDIGAIYSNKISLMQLSGDFRPVEREIVFDIDMDDYDEFRTCCSDKKVCN 135
Query: 404 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
KCW+++ IA E+I LK+DFGF ++LWV+SGRRGIHCWV D AR L + GR +I +YL
Sbjct: 136 KCWRYIKIAVELITITLKEDFGFVNVLWVYSGRRGIHCWVCDKTARQLPTEGRISIIEYL 195
Query: 584 CL 589
L
Sbjct: 196 NL 197
>UniRef50_Q7KQM1 Cluster: DNA primase small subunit; n=12;
Plasmodium|Rep: DNA primase small subunit - Plasmodium
falciparum (isolate 3D7)
Length = 452
Score = 153 bits (370), Expect = 4e-36
Identities = 79/208 (37%), Positives = 121/208 (58%), Gaps = 21/208 (10%)
Frame = +2
Query: 23 VKMIGEHNENILSDM-LPTYYARQFPQNIFCRWLACGSS----------PQPLCNRELSF 169
++++G+ ++I+++ L YY P N WL + P RE SF
Sbjct: 3 MEIVGDIKDSIVNENDLIFYYRSLCPINDLYNWLNYKNDIKGKYTKLNDPHFFSKREFSF 62
Query: 170 TLA------DDVYLRYLSISHQKDLQT-LLQKKCPHKLDVGAVYNTKPSVGRHDAVV--- 319
T +++Y+R+LS S+ ++ + LL P K D+GA+YN S +
Sbjct: 63 TCKKSDQGKEEIYIRWLSFSNPEEFKNKLLSDLVPIKFDIGAIYNFPVSQKDQKGDIFLP 122
Query: 320 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 499
+ +EL+FDID+ DYD+IRTCC + +VC+ CWKF+ +A ++D AL++DF F+ ILWV+SG
Sbjct: 123 VQKELIFDIDMNDYDDIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHILWVYSG 182
Query: 500 RRGIHCWVSDYEARTLDSPGRGAIADYL 583
RRGIHCWV+D R + R A+ADYL
Sbjct: 183 RRGIHCWVADESCRYYTTDARAALADYL 210
>UniRef50_Q00WX0 Cluster: DNA primase; n=2; Ostreococcus|Rep: DNA
primase - Ostreococcus tauri
Length = 452
Score = 150 bits (364), Expect = 2e-35
Identities = 73/185 (39%), Positives = 106/185 (57%), Gaps = 14/185 (7%)
Frame = +2
Query: 77 YYARQFPQNIFCRWLACGSSPQPLC-------NRELSFTLADD-----VYLRYLSISHQK 220
YY +P +WL+ G+ + RE F L + ++ RY
Sbjct: 55 YYRNFYPAEALFKWLSHGNDERHAKADKTYAGKREFCFVLDKENGDGEIFCRYQCFEDAG 114
Query: 221 DLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVV--ISRELVFDIDLTDYDEIRTCCQEAR 394
++ K P +++ G V N KP+ RH + + RELVFDID+TDYD++RTCC++A+
Sbjct: 115 RFAREVRSKNPARIEFGPVMNAKPA-HRHSVKLHSVERELVFDIDMTDYDDVRTCCKDAQ 173
Query: 395 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 574
+C KCW M IA +I+D L+ DFGF+ +LWV+SGRRG+HCWVSD AR L R A+A
Sbjct: 174 ICGKCWPLMTIAIKILDAGLRRDFGFKHLLWVYSGRRGVHCWVSDERARKLSDEARAAVA 233
Query: 575 DYLCL 589
+Y +
Sbjct: 234 EYFAV 238
>UniRef50_Q4QBV6 Cluster: DNA primase small subunit, putative; n=6;
Trypanosomatidae|Rep: DNA primase small subunit,
putative - Leishmania major
Length = 451
Score = 144 bits (350), Expect = 1e-33
Identities = 67/148 (45%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Frame = +2
Query: 146 LCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSV--GRHDAVV 319
L RE FTL D++ R+ S ++L+ L + P K+DVGAVYN +P+ G +
Sbjct: 100 LARREFCFTLIGDIFTRFRSYRSSEELRAELVRCFPEKIDVGAVYNIRPNQKQGLANVFP 159
Query: 320 ISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 499
+ RELVFDID++DYD +R+CC +C CW +M A ++ L+DDFGF+ IL VFSG
Sbjct: 160 VERELVFDIDMSDYDNVRSCCSGKSICSYCWAWMSCAAHVLHTVLRDDFGFKYILPVFSG 219
Query: 500 RRGIHCWVSDYEARTLDSPGRGAIADYL 583
RRGIH WV D AR + + R A+ YL
Sbjct: 220 RRGIHLWVCDRRARRMTNDERTALVGYL 247
>UniRef50_UPI000049921B Cluster: DNA primase small subunit; n=2;
Entamoeba histolytica HM-1:IMSS|Rep: DNA primase small
subunit - Entamoeba histolytica HM-1:IMSS
Length = 365
Score = 140 bits (338), Expect = 3e-32
Identities = 68/171 (39%), Positives = 101/171 (59%)
Frame = +2
Query: 77 YYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPH 256
YY + FP F +W+ RELSFT+ D+ Y+RY ++L+ L++K P
Sbjct: 14 YYDKSFPVETFYKWITRNKKYSD--TRELSFTMFDESYIRYQHFKSSEELKRKLKEKVPI 71
Query: 257 KLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACE 436
K D+GAV++ K +G + ++ RE V DID+ +Y+++R CCQ +CEKCW +V A +
Sbjct: 72 KFDIGAVFD-KLLIGVTNTPLL-REFVIDIDMDEYNDVRYCCQGTNICEKCWTLLVAAVQ 129
Query: 437 IIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
+++ L + FGF+ IL VFSGRRGIH WV D A + R + YL L
Sbjct: 130 VLNYILHEQFGFKHILNVFSGRRGIHIWVCDDSAMEMTDTLRMNVVQYLNL 180
>UniRef50_A0EG74 Cluster: DNA primase; n=1; Paramecium
tetraurelia|Rep: DNA primase - Paramecium tetraurelia
Length = 410
Score = 134 bits (323), Expect = 2e-30
Identities = 75/183 (40%), Positives = 96/183 (52%), Gaps = 14/183 (7%)
Frame = +2
Query: 77 YYARQFPQNIFCRWLACGSSPQP----LCNRELSFTLADD---VYLRYLSISHQKDLQTL 235
YY FP + WL+ QP RE SF + D Y RY + LQ
Sbjct: 16 YYKHLFPIQMIVDWLSYAKDNQPELRYFSRREFSFERSIDGETFYQRYQQFQNAYGLQKF 75
Query: 236 L-------QKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEAR 394
L Q K D+GAV++ P G + +E+V DID+ YDE+RTCCQ A+
Sbjct: 76 LLDNKQNDQTSTLIKYDIGAVFDKLPKKGEK-LKAMEKEIVIDIDMDAYDEVRTCCQGAK 134
Query: 395 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIA 574
+CEKCWKF+ +AC+I+ AL DFG + IL V+SGRRGIH WV D R + R AI
Sbjct: 135 ICEKCWKFLQVACDILRPALFQDFGLEHILAVYSGRRGIHLWVCDSHIRKSTNEVRSAII 194
Query: 575 DYL 583
YL
Sbjct: 195 GYL 197
>UniRef50_Q8SRD5 Cluster: DNA primase; n=1; Encephalitozoon
cuniculi|Rep: DNA primase - Encephalitozoon cuniculi
Length = 298
Score = 133 bits (321), Expect = 3e-30
Identities = 70/173 (40%), Positives = 101/173 (58%), Gaps = 1/173 (0%)
Frame = +2
Query: 65 MLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQK 244
++ TYY FP ++ R L S RE+SF L Y+R+L+ + + L
Sbjct: 24 LMRTYYRTLFPLDLMFRCLRIDES------REISFGLGSGGYIRFLTFRTADEFRKKLMG 77
Query: 245 KCPHKLDVGAVYNTKPSVGRHD-AVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFM 421
P K+DVGA+Y +P+ +H + V+ +ELVFD+DLTDY R CC E VC +C +
Sbjct: 78 IAPDKIDVGAIYRDRPT--KHSISRVVGKELVFDVDLTDYP--RECCSEKLVCNRCLVLI 133
Query: 422 VIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADY 580
A EI++ +L+++FGF+ + +VFSGRRG+HCWV D EA L RG I Y
Sbjct: 134 KAAVEILNYSLREEFGFKDVGFVFSGRRGVHCWVFDDEALELSDLERGEIVKY 186
>UniRef50_A2G330 Cluster: DNA primase; n=1; Trichomonas vaginalis
G3|Rep: DNA primase - Trichomonas vaginalis G3
Length = 362
Score = 126 bits (304), Expect = 4e-28
Identities = 63/180 (35%), Positives = 104/180 (57%), Gaps = 4/180 (2%)
Frame = +2
Query: 62 DMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQ 241
++L YY+ +FP +W++ G + +PL NRE F D+ ++R+ ++ L+ L
Sbjct: 7 ELLRKYYSDKFPLEDIKQWISYGGN-EPLENRECGFFFDDEKFMRWQTVDV---LRRLAL 62
Query: 242 KKCPHKLDVGAVYNTKPSVGRHDAV----VISRELVFDIDLTDYDEIRTCCQEARVCEKC 409
P ++++G VY ++ + + S+EL+FD+D D+ +I+ CC ++ +CEKC
Sbjct: 63 ANPPQRMEIGPVYTHPIAIRQQQSPGEFRPKSKELIFDLDADDFKDIKCCCGDSEICEKC 122
Query: 410 WKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
W +M A + + L+ +FGF+ I VFSGRRGIH WV D +AR L + R I YL L
Sbjct: 123 WPYMHCAIDCLTTILRTNFGFKKIFPVFSGRRGIHIWVCDKKARELSAAVRDKIVHYLNL 182
>UniRef50_Q54MM7 Cluster: DNA primase; n=1; Dictyostelium discoideum
AX4|Rep: DNA primase - Dictyostelium discoideum AX4
Length = 409
Score = 122 bits (293), Expect = 8e-27
Identities = 68/192 (35%), Positives = 103/192 (53%), Gaps = 20/192 (10%)
Frame = +2
Query: 68 LPTYYARQFPQNIFCRWLACGS-------SPQPLCNRELSFTL---ADDVYLRYLSISHQ 217
L YY + FP ++ WL S + RE S + + +R S +
Sbjct: 22 LREYYDKLFPFDLLYDWLTINSINEKEEDKKRAFERREFSVRINKVSSSFVIRNKSFNRV 81
Query: 218 KDLQTLLQKK--------CPHKLDVGAVYNTKPSVGR--HDAVVISRELVFDIDLTDYDE 367
+DL+ L+ + P +LD+G + + +PS D +S+ELVFDID+ DY+
Sbjct: 82 EDLKEFLKGRQNIDGVYEVPERLDIGPICSWEPSKKATVSDYQPVSKELVFDIDVDDYNP 141
Query: 368 IRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTL 547
IR CC +CEKCW F+ ++ E ID L++ FGFQ I++VFSGRRG+H WVSD A+ L
Sbjct: 142 IRVCCSSTSLCEKCWGFLAVSAEFIDNYLRECFGFQQIMYVFSGRRGLHIWVSDRAAQHL 201
Query: 548 DSPGRGAIADYL 583
R +I +++
Sbjct: 202 TRENRASILNHI 213
>UniRef50_UPI00004983C2 Cluster: DNA primase small subunit; n=1;
Entamoeba histolytica HM-1:IMSS|Rep: DNA primase small
subunit - Entamoeba histolytica HM-1:IMSS
Length = 372
Score = 113 bits (271), Expect = 4e-24
Identities = 57/166 (34%), Positives = 86/166 (51%)
Frame = +2
Query: 92 FPQNIFCRWLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVG 271
FP +F +W+ REL+ + + RYL + DL L + P ++++G
Sbjct: 36 FPSKLFYQWVTRNGKYSQ--TRELAAFKTNSFFNRYLHFNSSYDLSNYLSRYVPERIEIG 93
Query: 272 AVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKA 451
+++ + A + RE V DID+ DYD+IR CC +VC+KCW M A ++I
Sbjct: 94 PIFDHLLFNKTNTATM--REFVIDIDIDDYDDIRYCCSSTQVCKKCWILMSCAAKVIHHI 151
Query: 452 LKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
++ FG + IL VFSGRRGIH W+ D +A + R I Y L
Sbjct: 152 FQEQFGMKHILNVFSGRRGIHFWICDEQALHFNEQMRTYITKYFSL 197
>UniRef50_Q7QRZ8 Cluster: DNA primase; n=1; Giardia lamblia ATCC
50803|Rep: DNA primase - Giardia lamblia ATCC 50803
Length = 449
Score = 108 bits (259), Expect = 1e-22
Identities = 65/186 (34%), Positives = 94/186 (50%), Gaps = 12/186 (6%)
Frame = +2
Query: 56 LSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNRELSF---TLADDVYL-RYLSISHQKD 223
L+ YY +P WL S RE S+ T D+ ++ R+ IS +
Sbjct: 8 LAPAYAVYYENYYPYEEIVEWLTYHGSVLTQ-RREWSYEIITATDETFVTRFREISDAEQ 66
Query: 224 LQTLLQ------KKCPHKLDVGAVYNTKPSVGRH--DAVVISRELVFDIDLTDYDEIRTC 379
L+++L+ + KLD+G VY + S + + RELVFDID DYD IRTC
Sbjct: 67 LRSILRFSSKTLEDFKLKLDIGPVYTSDMSQRKTQPEFAPCERELVFDIDAGDYDRIRTC 126
Query: 380 CQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPG 559
C +C+KCW+FM +A ++ + GF +VFSGRRG+HCW+ D AR L
Sbjct: 127 CAGPAMCDKCWRFMELAVPLLILFCR-VHGFNDYFFVFSGRRGLHCWICDARARKLSKDS 185
Query: 560 RGAIAD 577
R ++ D
Sbjct: 186 RKSMVD 191
>UniRef50_A2Y3N8 Cluster: DNA primase; n=4; Oryza sativa|Rep: DNA
primase - Oryza sativa subsp. indica (Rice)
Length = 397
Score = 72.5 bits (170), Expect = 7e-12
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
Frame = +2
Query: 59 SDMLPTYYARQFPQNIFCRWLACGSSPQ-PLCN------RELSFTLADDVYLRYLSISHQ 217
+D L YY + FP F +WL+ G+ + P C+ RE SFTL +D+Y+R+ S
Sbjct: 31 ADYLRIYYGKLFPHVDFFKWLSYGNDGKHPGCDQSYVGRREFSFTLENDIYVRFQSFDSV 90
Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPS-------VGRHDAVVISRELVFDI 346
+++ +++KCP K+D+G VY+ P+ G + V + REL+FDI
Sbjct: 91 AEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFVPVERELIFDI 140
>UniRef50_UPI000155BA73 Cluster: PREDICTED: similar to hCG2016482,
partial; n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
similar to hCG2016482, partial - Ornithorhynchus
anatinus
Length = 224
Score = 61.7 bits (143), Expect = 1e-08
Identities = 26/43 (60%), Positives = 29/43 (67%)
Frame = +2
Query: 461 DFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
DFGFQ LWV+SGRRG+HCWV D AR L R I +YL L
Sbjct: 1 DFGFQHRLWVYSGRRGVHCWVCDASARKLSPAVRSGIVEYLSL 43
>UniRef50_UPI000155BDB7 Cluster: PREDICTED: similar to retinol
dehydrogenase similar protein, partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to
retinol dehydrogenase similar protein, partial -
Ornithorhynchus anatinus
Length = 192
Score = 58.4 bits (135), Expect = 1e-07
Identities = 26/44 (59%), Positives = 34/44 (77%)
Frame = +2
Query: 152 NRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYN 283
+RE SFTL DDVY+RY S S Q +L+ +QK P+K+DVGAVY+
Sbjct: 147 HREFSFTLKDDVYIRYQSFSTQAELEKEMQKLSPYKIDVGAVYS 190
>UniRef50_O29516 Cluster: Probable DNA primase small subunit; n=2;
Archaeoglobus fulgidus|Rep: Probable DNA primase small
subunit - Archaeoglobus fulgidus
Length = 335
Score = 54.8 bits (126), Expect = 1e-06
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 5/156 (3%)
Frame = +2
Query: 137 PQPLCNRELSFT----LADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGR 304
P+ NRE +F L D V R++S + D + + P + + Y +P+ +
Sbjct: 23 PRKFKNREFAFVPLELLPDFVMHRHISFRSETDFRAYILSNVPAHIYFSSAYYERPAEDK 82
Query: 305 -HDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSI 481
+ + +L+FDID D+ ++ A+ EK + + + L+ DFG + +
Sbjct: 83 MENKGWLGADLIFDID-ADHLPVK-----AQSFEKALEMAKREIKKLTAVLRADFGIRDM 136
Query: 482 LWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
FSG RG H V D E +L S R I DYL L
Sbjct: 137 KIYFSGGRGYHVHVHDEEFLSLGSAERREIVDYLRL 172
>UniRef50_A3DM85 Cluster: DNA primase; n=1; Staphylothermus marinus
F1|Rep: DNA primase - Staphylothermus marinus (strain
ATCC 43588 / DSM 3639 / F1)
Length = 377
Score = 52.0 bits (119), Expect = 1e-05
Identities = 55/179 (30%), Positives = 80/179 (44%), Gaps = 28/179 (15%)
Frame = +2
Query: 137 PQPLCNRELSF-TLADDVYLRYLSISHQKDLQT-LLQKKCPHKLDVGAVYNTKPSVGRHD 310
P + RE++ +L D+ Y+R+LS L +L +K P L + Y PSV + +
Sbjct: 28 PLYIHKREIAIHSLEDEAYIRHLSFPSITHLYNFILNEKTPLHLYYSSAYYESPSVNKME 87
Query: 311 AVV-ISRELVFDIDLTDY---DEIRTCCQEA--------RVCEKCWKFMVI----ACEII 442
I +L+FD+D Y D+I + C E + C K VI E I
Sbjct: 88 LKGWIGSDLMFDLDSDHYPGCDKILSICIEENTIYDGKIKTCPKTESKPVIHPLIKTECI 147
Query: 443 DKA----------LKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
KA L+D+ G ++I FSG RG H V D + L+S R IA Y+ L
Sbjct: 148 QKAYRDALRIKYILEDELGLKNIKIYFSGNRGFHVKVIDEKIWDLESDERREIASYISL 206
>UniRef50_Q0W8M0 Cluster: DNA primase, small subunit; n=2;
Archaea|Rep: DNA primase, small subunit - Uncultured
methanogenic archaeon RC-I
Length = 400
Score = 50.0 bits (114), Expect = 4e-05
Identities = 44/156 (28%), Positives = 64/156 (41%), Gaps = 7/156 (4%)
Frame = +2
Query: 137 PQPLCNRELSFTLADDVY----LRYLSISHQKDLQTLLQKKCP-HKLDVGAVYNTKPSVG 301
P L RE F ++ R+ + + + +L L+ P H A Y +
Sbjct: 25 PPGLAQREWGFIFHEETVGVAMRRHKAFNSEGELADYLRSMPPAHAYHSAAYYRHPQAPT 84
Query: 302 RHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQS- 478
+ + +L+FD+D ++ E V +ID+ L DD GF+
Sbjct: 85 MQEKDWLGADLIFDLDADHLPGVKNMTYG----EMLDNVKVEIIRLIDEFLIDDLGFREK 140
Query: 479 -ILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
+ VFSG RG H V D RTL SP R I DYL
Sbjct: 141 DMDIVFSGGRGYHVHVRDERVRTLKSPERREIVDYL 176
>UniRef50_Q6L0W5 Cluster: Probable DNA primase small subunit; n=2;
Thermoplasmatales|Rep: Probable DNA primase small
subunit - Picrophilus torridus
Length = 370
Score = 49.6 bits (113), Expect = 5e-05
Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 3/152 (1%)
Frame = +2
Query: 137 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAV 316
P + RE+ + +R+LS + +++++ +++ P L + Y KP R +
Sbjct: 23 PDLISKREIGYIPFSGTMIRHLSFRNHREIESFVKRNTPRHLYYSSAYYIKPDEKRMEKK 82
Query: 317 VIS-RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQ--SILW 487
+ EL+FD+D E + E + +I+ DFGF SI
Sbjct: 83 IWEGAELIFDLDADHIPGSDKMTYEEILLEVKKHVSRLLNYLIN-----DFGFDDDSIKL 137
Query: 488 VFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
FSG RG H V +LDS R I +Y+
Sbjct: 138 YFSGGRGYHVHVVSDRVYSLDSDARREIGNYI 169
>UniRef50_Q9YEZ8 Cluster: Probable DNA primase small subunit; n=1;
Aeropyrum pernix|Rep: Probable DNA primase small subunit
- Aeropyrum pernix
Length = 342
Score = 48.8 bits (111), Expect = 9e-05
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 2/153 (1%)
Frame = +2
Query: 137 PQPLCNRELSFTLAD-DVYLRYLSISHQKDLQTLLQKKCPHKLDVG-AVYNTKPSVGRHD 310
P+ + RE +F L D DVY+R++ ++L + + ++ P A Y+ + +
Sbjct: 27 PRDIAYREFAFQLFDGDVYVRHIGFDSMEELLSYMAREAPKNAYYSVARYSLPTARSMEE 86
Query: 311 AVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWV 490
+ EL+FDID+ D + C + + + C + +AL DFG S L+
Sbjct: 87 KGWLGSELMFDIDV---DSLEGCGEV--LGDSCLSRGYKQAVRLVEALYRDFGVPSTLY- 140
Query: 491 FSGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
F+G RG H R L R IA Y L
Sbjct: 141 FTGNRGFHVLADCGWCRRLGREERREIARYFTL 173
>UniRef50_Q8ZTY1 Cluster: Probable DNA primase small subunit; n=4;
Pyrobaculum|Rep: Probable DNA primase small subunit -
Pyrobaculum aerophilum
Length = 312
Score = 48.0 bits (109), Expect = 2e-04
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 3/146 (2%)
Frame = +2
Query: 155 RELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVV---IS 325
RE +F +R+ S +DL+ + +K P + A Y +P G D I
Sbjct: 25 REFAFQPFSGGMVRHKSFKSLEDLRKFVVEKTPRHIYHSAAYYERP--GEEDMERKGWIG 82
Query: 326 RELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRR 505
+L+FDID D+ + C + V +C + + L + + VFSG R
Sbjct: 83 ADLIFDID-GDHLDTEACRESKIVSLRCLEDAREEANKLIDVLIQELDLKPTRIVFSGNR 141
Query: 506 GIHCWVSDYEARTLDSPGRGAIADYL 583
G H VS E L S R + +YL
Sbjct: 142 GFHIHVSSEEVMKLGSRERRELVNYL 167
>UniRef50_Q979L5 Cluster: Probable DNA primase small subunit; n=4;
Thermoplasma|Rep: Probable DNA primase small subunit -
Thermoplasma volcanium
Length = 333
Score = 47.6 bits (108), Expect = 2e-04
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 3/152 (1%)
Frame = +2
Query: 137 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRH-DA 313
P + RE+ F + +R++ +S++ +L +L+ P + A Y KP + +
Sbjct: 27 PALITKREVGFMTFEGEIIRHMHLSNKFELNNMLRTTVPRHVYSSAAYYKKPDEKKMPEK 86
Query: 314 VVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGF--QSILW 487
+ +L+FD+D E E +++K L D G + I
Sbjct: 87 IWEGADLIFDLDSDHLPGAEKMTYE----EMLNSIKEQTKRLVNKFLVSDLGISEKDIRI 142
Query: 488 VFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
FSG RG H VS + L S R I DY+
Sbjct: 143 YFSGSRGYHVHVSSEDVYPLGSDARREITDYV 174
>UniRef50_Q9HPU3 Cluster: Probable DNA primase small subunit; n=6;
Halobacteriaceae|Rep: Probable DNA primase small subunit
- Halobacterium salinarium (Halobacterium halobium)
Length = 391
Score = 47.6 bits (108), Expect = 2e-04
Identities = 36/138 (26%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Frame = +2
Query: 179 DDVYLRYLSISHQKDLQTLLQKKCPHKLDVGA-VYNTKPSVGRHDAVVISRELVFDIDLT 355
D +R+ S + + L++KCP + A Y+ + + +LVFD+D
Sbjct: 43 DTTMVRHKSTLDLGSMTSFLERKCPRHVYFSAGTYDAPGAATMDEKHWQGSDLVFDLDAD 102
Query: 356 DYDEIRTCCQE--ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSD 529
+ T ++ A + KC ++ + +++ DFGF+ + FSG RG H V D
Sbjct: 103 HLPRV-TLGEDSYAEMLSKCKDALLRLLDFLER----DFGFEELTVTFSGGRGYHVHVRD 157
Query: 530 YEARTLDSPGRGAIADYL 583
L S R I DY+
Sbjct: 158 AGVYELGSEERREIVDYV 175
>UniRef50_A1RXU6 Cluster: DNA primase; n=1; Thermofilum pendens Hrk
5|Rep: DNA primase - Thermofilum pendens (strain Hrk 5)
Length = 389
Score = 47.2 bits (107), Expect = 3e-04
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 35/197 (17%)
Frame = +2
Query: 98 QNIFCRWLACGS--SPQPLCNRELSFTLADDV-YLRYLSISHQKDLQTLLQKKCPHKLDV 268
+ +F R+ A S +P L RE +F++ + +R+LS S +++L ++ P
Sbjct: 17 RGLFARYYARTSVEAPSELSKREFAFSMFNSTSMIRHLSFSTREELDDYIRVNVPQHAYY 76
Query: 269 GAVYNTKPSVGRH-DAVVISRELVFDIDL----TDYDEI--RTCCQEA--------RVCE 403
+ Y PS + + +LVFDID+ T ++ R CQ+ + C
Sbjct: 77 SSAYYQYPSAQEMGEKGWLGADLVFDIDVDHIPTPCKDLHDRWRCQDCGAEGWGFTKKCP 136
Query: 404 KC------W-KFMVIAC------EIID--KALKDDFGFQ--SILWVFSGRRGIHCWVSDY 532
C W K++ C E+I + L+DDFGF + FSG RG H V
Sbjct: 137 SCGSERLEWSKWVCSTCINVAREEMIKLVEILEDDFGFDRAEMRVAFSGHRGFHLHVESE 196
Query: 533 EARTLDSPGRGAIADYL 583
+ LD R I DY+
Sbjct: 197 AVKDLDQDARREITDYV 213
>UniRef50_Q2FPD1 Cluster: DNA primase; n=2; Methanomicrobiales|Rep:
DNA primase - Methanospirillum hungatei (strain JF-1 /
DSM 864)
Length = 388
Score = 46.4 bits (105), Expect = 5e-04
Identities = 43/159 (27%), Positives = 66/159 (41%), Gaps = 7/159 (4%)
Frame = +2
Query: 131 SSPQPLCNRELSFTLADDVY------LRYLSISHQKDLQTLLQKKCP-HKLDVGAVYNTK 289
S P + RE F DD Y R++ S ++Q ++ P H A Y T
Sbjct: 23 SPPSSVKEREFGFIFFDDRYPDDIRMRRHIGFSSGDEMQEYVKSLVPAHAYYSTAYYRTP 82
Query: 290 PSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFG 469
+ D + +L+FD+D D I EA + E+ +++D L D
Sbjct: 83 QAPTMGDKEWLGADLIFDLDA---DHIMRGSYEAML-ERIKGEAEKLLDVLDNELGIDM- 137
Query: 470 FQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLC 586
++I VFSG RG H V + R + R + DY+C
Sbjct: 138 -RTIKLVFSGGRGYHVHVQELAFRDFEPAERRELVDYVC 175
>UniRef50_Q58249 Cluster: DNA primase; n=6; Methanococcales|Rep: DNA
primase - Methanococcus jannaschii
Length = 350
Score = 43.6 bits (98), Expect = 0.004
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Frame = +2
Query: 137 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKP--SVGRHD 310
P+ + RE + V R LS ++++ + + K P Y P S G
Sbjct: 27 PEGIEYREFGYGYLKKVDNRNLSFKNEREYKDWVLKNAPMHFYKSLAYMLYPNKSGGASK 86
Query: 311 AVVISRELVFDIDLTDYDEIRTCCQEAR-VCEKCWKFMVI-ACEIIDKALKDDFGF--QS 478
+ REL FDID+ + + C E +C+ C + A +I++ L DFG +
Sbjct: 87 KGIFRRELAFDIDV---HKTKKCKHEDDWICKHCLEEAKNQAIYLIEEFLIPDFGLNEED 143
Query: 479 ILWVFSGRRGIHCWVSDYEARTLD 550
+ VFSG RG H ++ + + D
Sbjct: 144 LKIVFSGNRGYHIYIKPRDEKIRD 167
>UniRef50_A3CX73 Cluster: DNA primase; n=2; Methanomicrobiales|Rep:
DNA primase - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 387
Score = 42.7 bits (96), Expect = 0.006
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Frame = +2
Query: 137 PQPLCNRELSFTLAD---DVYLR-YLSISHQKDLQTLLQKKCP-HKLDVGAVYNTKPSVG 301
P L RE F D +V +R +++ + +++L ++ P H A Y T +
Sbjct: 25 PSSLEQREWGFIFFDAAAEVRMRRHMAFADREELGAYVKSLVPAHVYYSTAYYQTPSAPT 84
Query: 302 RHDAVVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQ-- 475
++ +L+FD+D ARV E+ K + + L D+ GF
Sbjct: 85 MNEKHWAGADLIFDLDADHIVRGPYAMMLARVKEETEKLLAM--------LTDELGFDRS 136
Query: 476 SILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYLC 586
I FSG RG H V+D R S R I DY+C
Sbjct: 137 QIRLAFSGGRGYHIHVTDIGVRGWGSQERREIVDYVC 173
>UniRef50_Q9P9H1 Cluster: DNA primase small subunit; n=5;
Thermococcaceae|Rep: DNA primase small subunit -
Pyrococcus furiosus
Length = 347
Score = 41.1 bits (92), Expect = 0.019
Identities = 29/85 (34%), Positives = 41/85 (48%)
Frame = +2
Query: 329 ELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRG 508
ELVFDID D R + VC C + + L+++ GF++I V+SG RG
Sbjct: 91 ELVFDIDAKDLPLKRCNHEPGTVCPICLEDAKELAKDTLIILREELGFENIHVVYSG-RG 149
Query: 509 IHCWVSDYEARTLDSPGRGAIADYL 583
H + D A LDS R I ++
Sbjct: 150 YHIRILDEWALQLDSKSRERILAFI 174
>UniRef50_A0B688 Cluster: DNA primase; n=1; Methanosaeta thermophila
PT|Rep: DNA primase - Methanosaeta thermophila (strain
DSM 6194 / PT) (Methanothrixthermophila (strain DSM 6194
/ PT))
Length = 395
Score = 40.7 bits (91), Expect = 0.025
Identities = 43/155 (27%), Positives = 65/155 (41%), Gaps = 5/155 (3%)
Frame = +2
Query: 134 SPQPLCNRELSFTLADDVYLR-YLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGR-H 307
+P + RE F D +R + S +K+L ++ P + A Y KP
Sbjct: 24 APPGMEAREWGFIFYDTPGMRRHRSFRSRKELVDYIRSTVPAHVYHSAAYYLKPDAPTMK 83
Query: 308 DAVVISRELVFDIDLTDYDEIR-TCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQS-- 478
+ + +L+FD+D E R + ++ R E + ++++ L D FGF
Sbjct: 84 EKIWKGADLIFDLDADHLAEYRGSGIRDFR--EMLERVKGETMKLLEFLLSD-FGFDERM 140
Query: 479 ILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
I FSG RG H V D L S R I DYL
Sbjct: 141 ISVAFSGGRGYHIHVRDKSVLKLRSDARREIVDYL 175
>UniRef50_Q8PVZ4 Cluster: Probable DNA primase small subunit; n=4;
Methanosarcinaceae|Rep: Probable DNA primase small
subunit - Methanosarcina mazei (Methanosarcina frisia)
Length = 414
Score = 40.3 bits (90), Expect = 0.033
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
Frame = +2
Query: 137 PQPLCNRELSFTLADDV----YLRYLSISHQKDLQTLLQKKCP-HKLDVGAVYNTKPSVG 301
P L NRE +F DD+ R+ S + L P H + A Y +
Sbjct: 25 PDHLPNREWAFIFYDDMPEKMMHRHKSFGSPGEALDYLYGMAPAHVYNSTAYYEYPDARK 84
Query: 302 RHDAVVISRELVFDIDLTDYDEIRTCCQE-ARVCEKCWKFMVIACEIIDKALKDDFGF-- 472
++ + EL+FD+D D + + A + E K + +++D L DDFGF
Sbjct: 85 MNEKNWLGAELIFDLDA---DHLPNAPRNYADMLELVKKETL---KLMDFLL-DDFGFSE 137
Query: 473 QSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
Q I VFSG RG H ++ + TL S R I +YL
Sbjct: 138 QDIELVFSGGRGYHFHITSPKVLTLGSSERREIVNYL 174
>UniRef50_Q8WTP4 Cluster: Phosphatidylinositol phosphate kinase 6;
n=3; Dictyostelium discoideum|Rep: Phosphatidylinositol
phosphate kinase 6 - Dictyostelium discoideum (Slime
mold)
Length = 1589
Score = 37.9 bits (84), Expect = 0.18
Identities = 21/72 (29%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = +2
Query: 20 LVKMIGEHNENILSDMLPTY--YARQFPQNIFCRWLACGSSPQPLCNRELSFTLADDVYL 193
L+K I H E+IL +LPTY + +++P ++ + L C + Q E+ F + ++++
Sbjct: 1339 LIKTIPTHEESILKAVLPTYVQHLQKYPNSLLIKILGC-YTLQIKGKAEMKFLVMNNLFF 1397
Query: 194 RYLSISHQKDLQ 229
L +S + DL+
Sbjct: 1398 TPLPLSEKYDLK 1409
>UniRef50_A7DQM5 Cluster: DNA primase, small subunit; n=1;
Candidatus Nitrosopumilus maritimus SCM1|Rep: DNA
primase, small subunit - Candidatus Nitrosopumilus
maritimus SCM1
Length = 373
Score = 37.1 bits (82), Expect = 0.31
Identities = 20/91 (21%), Positives = 39/91 (42%)
Frame = +2
Query: 137 PQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAV 316
P+ RE + + R++S+ K+L LL + P + Y + P++ ++
Sbjct: 27 PERTSEREFGYQKFNSGMTRHISVKDDKELHLLLMQNVPSDVYCSNAYYSFPNLPMNEKD 86
Query: 317 VISRELVFDIDLTDYDEIRTCCQEARVCEKC 409
+L+FDID D + +C +C
Sbjct: 87 WKEADLIFDIDAKDLNLSCRGNHTLSICNEC 117
>UniRef50_Q8F7A1 Cluster: Diaminopimelate decarboxylase; n=7;
cellular organisms|Rep: Diaminopimelate decarboxylase -
Leptospira interrogans
Length = 422
Score = 35.5 bits (78), Expect = 0.94
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +2
Query: 257 KLDVGAVYNTKPSV--GRHDAVVISRELVFDIDLTDYDEIRTCCQ 385
KLD G NT+PS+ +H VV+S+E V DY + CC+
Sbjct: 296 KLDAGMDVNTRPSLYAAKHPLVVVSKEGVHSGKTADYVYVGHCCE 340
>UniRef50_A2A9Q9 Cluster: Novel protein simlar to melanoma antigen,
family B, 5 Mageb5; n=5; Murinae|Rep: Novel protein
simlar to melanoma antigen, family B, 5 Mageb5 - Mus
musculus (Mouse)
Length = 366
Score = 34.7 bits (76), Expect = 1.6
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 116 WLACGSSPQPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDV 268
WL+C SSP +C EL F D Y S + +T + C H LD+
Sbjct: 84 WLSCVSSPATVCGDELEFD--DGTYFHCGGNSLYSEYRTCQENPCKHCLDM 132
>UniRef50_A0RYW9 Cluster: Eukaryotic-type DNA primase, catalytic
(Small) subunit; n=1; Cenarchaeum symbiosum|Rep:
Eukaryotic-type DNA primase, catalytic (Small) subunit -
Cenarchaeum symbiosum
Length = 372
Score = 32.3 bits (70), Expect = 8.7
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 395 VCEKCWKFMVIACEIIDKALKDDFGF--QSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 568
+C+ C E + L++D G S++ FSG G H + + + L S RG
Sbjct: 140 LCKDCIGGAKKEVEKLMHILEEDLGVGRDSVVVYFSGNEGFHVHIGGTQFQGLGSRERGE 199
Query: 569 IADYL 583
+ADY+
Sbjct: 200 LADYV 204
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,070,691
Number of Sequences: 1657284
Number of extensions: 11679671
Number of successful extensions: 28146
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 27325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28098
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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