Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k09
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1 |Schi...   169   3e-43
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    29   0.51 
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    26   3.6  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   6.2  

>SPAC6B12.10c |spp1|pri1|DNA primase catalytic subunit Spp1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score =  169 bits (410), Expect = 3e-43
 Identities = 77/180 (42%), Positives = 110/180 (61%), Gaps = 5/180 (2%)
 Frame = +2

Query: 59  SDMLPTYYARQFPQNIFCRWLACGSS-PQPLCNRELSFTLADDVYLRYLSISHQKDLQTL 235
           S+ +  YY   FP     +WL  G        +RE +FTL +D Y+RYLS S+ ++L+  
Sbjct: 32  SETMIQYYRHLFPWKYLFQWLNHGPVVTNDFAHREFAFTLPNDAYIRYLSFSNWEELKKE 91

Query: 236 LQKKCPHKLDVGAVYNTKP----SVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 403
               CP + +VG VY+  P    ++ +     + +ELVFDID+TDYD++RTCC +  +CE
Sbjct: 92  ALNLCPSRFEVGPVYSANPRDRKTIRKSTFHPLKKELVFDIDMTDYDDVRTCCSKTNICE 151

Query: 404 KCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAIADYL 583
           KCW F+ IA +++D    +DFGF+ ILWV+SGRRGIH W+ D  A +LD   R  IA YL
Sbjct: 152 KCWPFITIAVQVLDICFHEDFGFKHILWVYSGRRGIHAWICDEIACSLDDRSRRMIASYL 211


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +2

Query: 395 VCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSG 499
           +C  C K   I   ++   L +  GF ++LW+F G
Sbjct: 497 ICAACGKAGAILSALLFNKLTEVIGFGNVLWIFFG 531


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = -2

Query: 472 EPEVIF*SFINDFTCNNHKFPAFFTH 395
           +P+V + + ++DF+C+ + FP   +H
Sbjct: 563 DPKVEYKAILHDFSCHTYDFPESLSH 588


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = +2

Query: 437 IIDKALKDDFGFQSIL-WVFSGRRGIHCWVSDYEARTLDSPGRGAIADY 580
           I+DK ++  FGF S+L   FS  R        +EA   DS G G +A Y
Sbjct: 399 ILDKPVESVFGFISVLPGAFSAYR--------FEALQNDSQGNGPLASY 439


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 119 LACGSSPQPLCNRELSFTLADDV--YLRYLSI-SHQKDLQTLLQKKCPHKLDVGAVYNT 286
           LA  S   PL   EL   L+  V  Y + L + +++  L  +L+KK  + +    +Y T
Sbjct: 712 LAALSDASPLVRHELVIFLSHFVVNYKKQLMVVAYESSLADILEKKNHNSISASTIYET 770


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,670
Number of Sequences: 5004
Number of extensions: 53411
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)