Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k09
         (590 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0678 - 16871481-16871620,16871836-16871881,16872170-168722...    73   2e-13
11_04_0339 - 16527602-16527742,16528622-16528800,16529617-165296...    29   2.8  
08_02_1426 + 27009720-27010787,27011846-27012517,27012999-270137...    28   4.8  
12_02_0128 - 13969118-13969222,13969329-13969460,13969558-139696...    27   8.5  
09_03_0174 - 13097138-13098265                                         27   8.5  
04_03_0652 - 18424489-18424525,18424639-18424702,18424796-184248...    27   8.5  

>05_03_0678 -
           16871481-16871620,16871836-16871881,16872170-16872243,
           16872495-16872552,16872640-16872702,16872891-16873012,
           16873132-16873247,16873367-16873428,16873497-16873589,
           16874061-16874138,16874248-16874423,16874500-16874550,
           16874964-16875078
          Length = 397

 Score = 72.5 bits (170), Expect = 2e-13
 Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 14/110 (12%)
 Frame = +2

Query: 59  SDMLPTYYARQFPQNIFCRWLACGSSPQ-PLCN------RELSFTLADDVYLRYLSISHQ 217
           +D L  YY + FP   F +WL+ G+  + P C+      RE SFTL +D+Y+R+ S    
Sbjct: 31  ADYLRIYYGKLFPHVDFFKWLSYGNDGKHPGCDQSYVGRREFSFTLENDIYVRFQSFDSV 90

Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPS-------VGRHDAVVISRELVFDI 346
            +++  +++KCP K+D+G VY+  P+        G +  V + REL+FDI
Sbjct: 91  AEMENSIKEKCPFKIDIGPVYSVDPAKRHAYAQSGNNVFVPVERELIFDI 140


>11_04_0339 -
           16527602-16527742,16528622-16528800,16529617-16529680,
           16530357-16530475,16530560-16530686,16530937-16531149,
           16531462-16531500
          Length = 293

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -3

Query: 510 IPRRPENTHRMLWNPKSSFKALSMISHAITINFQHFSHT 394
           I +R +   R++W  K    ALS ISHA  IN   F+ T
Sbjct: 71  ISKRKDEYVRIMW--KQEINALSSISHANVINLVGFADT 107


>08_02_1426 +
           27009720-27010787,27011846-27012517,27012999-27013793,
           27014914-27014943,27018095-27019987
          Length = 1485

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
 Frame = +2

Query: 122 ACGSSPQPLCNRELSFTLADDVYLRYLSISHQK-DLQTLLQKKCPHKLDVGAVYNTKPSV 298
           A  S P PL   EL  T  DD+    ++   +K DL  L+ K      ++ AV+ T  + 
Sbjct: 139 AAASEPSPLTAAELQSTTFDDIEATRVAKQQEKVDLVDLITKDGDGLQEI-AVWGTSGAT 197

Query: 299 GRHDAVVISRELVFD 343
           G    V ++ + V D
Sbjct: 198 GVASVVWVAYQKVKD 212


>12_02_0128 -
           13969118-13969222,13969329-13969460,13969558-13969671,
           13971843-13971941,13972035-13972171,13972505-13972598,
           13973248-13973355,13973442-13973537,13973673-13973845,
           13974818-13975172,13975308-13975442,13975524-13975667,
           13975762-13976436,13976552-13976617,13976710-13976877
          Length = 866

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
 Frame = +2

Query: 23  VKMIGEHNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLC-----NRELSFTLADDV 187
           +K  G ++    SD L  Y+++ F        LA GS    L      N +L+  + D V
Sbjct: 370 IKQQGNNSNMSCSDALQQYHSKSFNPR-----LASGSQENILTQHMKKNAQLAAKVLDCV 424

Query: 188 YLRYLSISHQKDLQTLLQKK 247
           Y+   S+  QKD  T  ++K
Sbjct: 425 YMSKASLFTQKDSTTTREEK 444


>09_03_0174 - 13097138-13098265
          Length = 375

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 293 SVGRHDAVVISRELVFDIDL 352
           S GRH ++ + + LVFDIDL
Sbjct: 99  STGRHLSMCVDQSLVFDIDL 118


>04_03_0652 -
           18424489-18424525,18424639-18424702,18424796-18424869,
           18425809-18425924,18426078-18426343,18427659-18427749
          Length = 215

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +2

Query: 413 KFMVIACEIIDKALKDDFGFQSILWVFS 496
           +F+V+ C ++   + + F F+ ++W FS
Sbjct: 98  QFLVLPCFLLALLIHEKFTFREVMWTFS 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,701,132
Number of Sequences: 37544
Number of extensions: 311989
Number of successful extensions: 726
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)