Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k09
(590 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21988| Best HMM Match : DNA_primase_S (HMM E-Value=0.0096) 81 9e-16
SB_42835| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 5e-14
SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_8368| Best HMM Match : VWA (HMM E-Value=0) 29 2.8
SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_20895| Best HMM Match : PBS_linker_poly (HMM E-Value=2.7) 28 5.0
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0) 27 8.7
>SB_21988| Best HMM Match : DNA_primase_S (HMM E-Value=0.0096)
Length = 153
Score = 80.6 bits (190), Expect = 9e-16
Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 1/83 (1%)
Frame = +2
Query: 44 NENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLC-NRELSFTLADDVYLRYLSISHQK 220
+++ L ++L YY FP ++ +WL+ G P+ NRE SFTL DDVYLRY S + Q+
Sbjct: 28 SQSDLPELLQQYYKWLFPYKLYHQWLSYGDVPKTYFPNREFSFTLKDDVYLRYQSFASQE 87
Query: 221 DLQTLLQKKCPHKLDVGAVYNTK 289
+++ +QK+ PHK+D+GAV++ K
Sbjct: 88 EMEKEIQKRNPHKIDIGAVFSHK 110
>SB_42835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 48.0 bits (109), Expect(2) = 5e-14
Identities = 20/31 (64%), Positives = 23/31 (74%)
Frame = +2
Query: 320 ISRELVFDIDLTDYDEIRTCCQEARVCEKCW 412
+ +ELVFDID+TDYDEIRTCC R CW
Sbjct: 15 LEKELVFDIDMTDYDEIRTCCNGRRGVH-CW 44
Score = 47.2 bits (107), Expect(2) = 5e-14
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 494 SGRRGIHCWVSDYEARTLDSPGRGAIADYLCL 589
+GRRG+HCWV D AR L GR A+A+YL +
Sbjct: 36 NGRRGVHCWVCDETARKLSQSGRSAVAEYLTI 67
>SB_687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 579
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = +2
Query: 224 LQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEIRTCCQEARVCE 403
+Q++L++ C VG + +T + + A+ + E+V + T I TC E RVC
Sbjct: 343 MQSILKESCKKNNTVGQLTHTL-DILQKCAIKLGGEVVDEFS-TKVTHIITCANENRVCA 400
Query: 404 KCWKFM 421
+ K++
Sbjct: 401 RTLKYL 406
>SB_8368| Best HMM Match : VWA (HMM E-Value=0)
Length = 771
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +2
Query: 224 LQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDEI 370
L+T + CP +D+ V ++ S+GR + V + R F D+ DY ++
Sbjct: 107 LRTARTRGCPIPIDLALVLDSSGSIGRRNWVKVKR---FAKDVIDYYDV 152
>SB_25688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 629
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 227 QTLLQKKCPHKLDVGAVYNTKPSVGRHDAVVISRELVFDIDLTDYDE 367
+T++ K CP +D+ + ++ S+GR + V + + +D+ D E
Sbjct: 158 KTVITKGCPIPIDLALLLDSSGSIGRRNWVKVQKFAKSIVDIYDISE 204
>SB_24443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 148
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Frame = +2
Query: 212 HQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVVI-SRELVFDID---LTDYDEIRTC 379
HQ D+ + + H+ DV V NT+P+V ++D +V+ +R V D + + TC
Sbjct: 59 HQNDVIVVNTRPNVHQNDV-IVVNTRPNVHQNDVIVVNTRPNVHQNDVIVVNTRPNVCTC 117
Query: 380 ---CQEARVCEK 406
CQ+ +C +
Sbjct: 118 NNSCQQMLLCSE 129
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +2
Query: 212 HQKDLQTLLQKKCPHKLDVGAVYNTKPSVGRHDAVVIS 325
HQ D+ + + H+ DV V NT+P+V ++D +V++
Sbjct: 45 HQNDVIVVNTRPNVHQNDV-IVVNTRPNVHQNDVIVVN 81
>SB_20895| Best HMM Match : PBS_linker_poly (HMM E-Value=2.7)
Length = 196
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -1
Query: 563 LDLDYREFWLHNLIPNSEYHA 501
LD+D FW HN +P YHA
Sbjct: 98 LDVDEFSFWAHNFVPKG-YHA 117
>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4700
Score = 27.9 bits (59), Expect = 6.6
Identities = 8/38 (21%), Positives = 22/38 (57%)
Frame = +2
Query: 335 VFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDK 448
+F+++ DY ++R C +E + ++ W + + I++
Sbjct: 1665 LFEVNFPDYKQLRACRREVILLKQLWDMIFVVLTSIEE 1702
>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1346
Score = 27.5 bits (58), Expect = 8.7
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 368 IRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHC 517
I+ C + C K WK C + DKA + FG Q ++ +G R C
Sbjct: 1073 IKRVCPDMS-CRK-WK-----CSMCDKAFRHPFGLQQHIYTHTGERPHQC 1115
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,780,824
Number of Sequences: 59808
Number of extensions: 384350
Number of successful extensions: 901
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 898
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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