Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k09
         (590 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071217-1|AAL48839.1|  438|Drosophila melanogaster RE26079p pro...   223   1e-58
AE014296-1426|AAF50439.1|  438|Drosophila melanogaster CG7108-PA...   223   1e-58
X79801-1|CAA56196.1|  438|Drosophila melanogaster DNA polymerase...   220   1e-57

>AY071217-1|AAL48839.1|  438|Drosophila melanogaster RE26079p
           protein.
          Length = 438

 Score =  223 bits (546), Expect = 1e-58
 Identities = 101/185 (54%), Positives = 130/185 (70%), Gaps = 4/185 (2%)
 Frame = +2

Query: 41  HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQ 217
           +N  +L DMLP YY R FP   F RWL+ GSS   +  NRE+SFTL DD+Y+RYL    Q
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 388
            +L+  +  + P K+D+G V ++KP   R        + RELVFDID+TDYDE+RTCC  
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 389 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 568
           A VC KCWKFMV+A  ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+AR LD  GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 569 IADYL 583
           +A+YL
Sbjct: 203 VAEYL 207


>AE014296-1426|AAF50439.1|  438|Drosophila melanogaster CG7108-PA
           protein.
          Length = 438

 Score =  223 bits (546), Expect = 1e-58
 Identities = 101/185 (54%), Positives = 130/185 (70%), Gaps = 4/185 (2%)
 Frame = +2

Query: 41  HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQ 217
           +N  +L DMLP YY R FP   F RWL+ GSS   +  NRE+SFTL DD+Y+RYL    Q
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 388
            +L+  +  + P K+D+G V ++KP   R        + RELVFDID+TDYDE+RTCC  
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 389 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 568
           A VC KCWKFMV+A  ++D AL++DFGF+ I+W+FSGRRGIHCWV DY+AR LD  GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 569 IADYL 583
           +A+YL
Sbjct: 203 VAEYL 207


>X79801-1|CAA56196.1|  438|Drosophila melanogaster DNA polymerase
           subunit A protein.
          Length = 438

 Score =  220 bits (537), Expect = 1e-57
 Identities = 101/185 (54%), Positives = 128/185 (69%), Gaps = 4/185 (2%)
 Frame = +2

Query: 41  HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPL-CNRELSFTLADDVYLRYLSISHQ 217
           +N  +L DMLP YY R FP   F RWL+ GSS   +  NRE+SFTL DD+Y+RYL    Q
Sbjct: 23  YNPEVLQDMLPVYYRRLFPHLPFYRWLSYGSSEDAIFSNREISFTLQDDIYIRYLCFDTQ 82

Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH---DAVVISRELVFDIDLTDYDEIRTCCQE 388
            +L+  +  + P K+D+G V ++KP   R        + RELVFDID+TDYDE+RTCC  
Sbjct: 83  AELEKEICSRNPIKIDIGPVMHSKPKNHRSIPGGLTPVQRELVFDIDMTDYDEVRTCCSG 142

Query: 389 ARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGA 568
           A VC KCWKFMV+A  ++D AL +DFGF+ I+W+FSGRRGIHCWV DY+AR LD  GR A
Sbjct: 143 AGVCLKCWKFMVLAARVLDVALAEDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYA 202

Query: 569 IADYL 583
            A+YL
Sbjct: 203 EAEYL 207


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,060,039
Number of Sequences: 53049
Number of extensions: 556940
Number of successful extensions: 1372
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2379510885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)