Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k09
         (590 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical pr...   184   3e-47
AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical ...   183   7e-47
Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U40956-4|AAA81759.1|  262|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical pr...    27   10.0 

>Z22179-4|CAA80161.1|  410|Caenorhabditis elegans Hypothetical
           protein F58A4.4 protein.
          Length = 410

 Score =  184 bits (449), Expect = 3e-47
 Identities = 93/186 (50%), Positives = 119/186 (63%), Gaps = 3/186 (1%)
 Frame = +2

Query: 41  HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQ 217
           +N   L   LP YY   FP   F +WL  G +     NR E +F LADDV++RY S + +
Sbjct: 3   YNSIRLPQDLPIYYKNFFPVKPFTKWLRYGQNNGDYFNRREFAFILADDVHIRYRSYNDE 62

Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKP-SVGRH-DAVVISRELVFDIDLTDYDEIRTCCQEA 391
                 L    P KLD+GAVYN +P +  RH D   + RELVFDIDLTDYD +R CC++A
Sbjct: 63  HAFFKALSSTNPEKLDIGAVYNHEPINNKRHTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 392 RVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAI 571
            VC KCWKFMV+A +I+D  L+D F F++ +WVFSGRRG+HCWV D +AR L++  R AI
Sbjct: 123 TVCPKCWKFMVLAVKILDFQLEDMFDFKARMWVFSGRRGVHCWVGDKKARMLNNYQRSAI 182

Query: 572 ADYLCL 589
           A  L L
Sbjct: 183 ATRLNL 188


>AF100306-5|AAC68924.2|  318|Caenorhabditis elegans Hypothetical
           protein T24C4.5 protein.
          Length = 318

 Score =  183 bits (446), Expect = 7e-47
 Identities = 90/186 (48%), Positives = 116/186 (62%), Gaps = 3/186 (1%)
 Frame = +2

Query: 41  HNENILSDMLPTYYARQFPQNIFCRWLACGSSPQPLCNR-ELSFTLADDVYLRYLSISHQ 217
           +N   L   LP YY   FP   F +WL  G +     NR E +F LADDV++RY S + +
Sbjct: 3   YNSIRLPQDLPIYYKNFFPVKPFTKWLCYGQNYGDYFNRREFTFILADDVHIRYRSYNDE 62

Query: 218 KDLQTLLQKKCPHKLDVGAVYNTKPSVGRH--DAVVISRELVFDIDLTDYDEIRTCCQEA 391
                 L    P KLD+GAVYN +P   +   D   + RELVFDIDLTDYD +R CC++A
Sbjct: 63  HSFVKALSSTNPEKLDIGAVYNHEPINNKRYTDYQAVERELVFDIDLTDYDPVRNCCKDA 122

Query: 392 RVCEKCWKFMVIACEIIDKALKDDFGFQSILWVFSGRRGIHCWVSDYEARTLDSPGRGAI 571
            VC KCWKFMV+A  I+D  L++ F F++ +WVFSGRRG+HCWV D +AR L++  R AI
Sbjct: 123 TVCPKCWKFMVLAVRILDFQLEEMFNFKARMWVFSGRRGVHCWVGDKKARMLNNNQRSAI 182

Query: 572 ADYLCL 589
           A  L L
Sbjct: 183 ATRLNL 188


>Z68749-1|CAA92960.2|  309|Caenorhabditis elegans Hypothetical
           protein F56H11.3 protein.
          Length = 309

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 442 NDFTCNNHKFPAFFTHSSFLTTCSYFII 359
           N +TC+    P F  HS+F  + SYF++
Sbjct: 259 NQYTCDT---PMFVLHSTFALSSSYFVL 283


>U40956-4|AAA81759.1|  262|Caenorhabditis elegans Hypothetical
           protein ZK402.1 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +2

Query: 140 QPLCNRELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVG-AVYNTKP--SVGRHD 310
           + L NR+ ++ L  D    Y  +  +++ Q  +    P K+D G ++   KP  SV ++D
Sbjct: 81  EELLNRDSTYNLLIDHSQEYKEVMMEENNQPTIYGNIPRKVDKGPSIPRRKPKNSVFKND 140

Query: 311 AVVISRELVFD 343
             V  R+   D
Sbjct: 141 KKVPMRDFTTD 151


>U55774-2|AAA98009.3|  380|Caenorhabditis elegans Hypothetical
           protein F35G8.1 protein.
          Length = 380

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 7/53 (13%)
 Frame = +2

Query: 11  VVVLVKMIGEHNENILSDMLPTYYARQFPQNI------FCRWLA-CGSSPQPL 148
           V+  V  +     N+L D++  Y  R  P N+      FC W A  G+   PL
Sbjct: 252 VIFAVSSLPLDLSNVLQDLIVVYQVRPVPDNVRHFIFFFCHWTAMAGTLLNPL 304


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,102,356
Number of Sequences: 27780
Number of extensions: 296695
Number of successful extensions: 770
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)