Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k09
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   6.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   9.0  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    21   9.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   9.0  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
          acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 35 GEHNENILSDMLPTYYARQFP 97
          G H + +L+D+L TY   + P
Sbjct: 21 GSHEKRLLNDLLDTYNVLERP 41


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +3

Query: 417 LWLLHVKSLIKL*KMT 464
           LWL H K+L+ + K+T
Sbjct: 112 LWLYHDKTLLYMSKLT 127


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 403 FTHSSFLTTCSY 368
           +T   FLTTCS+
Sbjct: 197 YTTEGFLTTCSF 208


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 509 IHCWVSDYEARTLDSPGRGAIADYL 583
           +HCW + Y+    ++  +GA ++ L
Sbjct: 257 LHCWATIYKTEGGNAFFKGAFSNIL 281


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 509 IHCWVSDYEARTLDSPGRGAIADYL 583
           +HCW + Y+    ++  +GA ++ L
Sbjct: 257 LHCWATIYKTEGGNAFFKGAFSNIL 281


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -2

Query: 403 FTHSSFLTTCSY 368
           +T   FLTTCS+
Sbjct: 197 YTTEGFLTTCSF 208


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,062
Number of Sequences: 438
Number of extensions: 3961
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)