Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k09
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41880.1 68418.m05099 DNA primase small subunit family contai...   167   4e-42
At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containi...    30   1.0  
At1g29330.1 68414.m03585 ER lumen protein retaining receptor (ER...    28   5.4  
At4g38260.1 68417.m05404 expressed protein contains Pfam PF05742...    27   9.4  

>At5g41880.1 68418.m05099 DNA primase small subunit family contains
           Pfam profile: PF01896 DNA primase small subunit
          Length = 407

 Score =  167 bits (407), Expect = 4e-42
 Identities = 74/149 (49%), Positives = 101/149 (67%), Gaps = 7/149 (4%)
 Frame = +2

Query: 155 RELSFTLADDVYLRYLSISHQKDLQTLLQKKCPHKLDVGAVYNTKPSV-------GRHDA 313
           RE SFTL +DVYLRY S  +   ++  ++   P+K+D+GAVY+  P         G +  
Sbjct: 50  REFSFTLENDVYLRYKSFKNASLMEAAIKSNFPYKIDIGAVYSVDPDKRHAYAQSGTNLF 109

Query: 314 VVISRELVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKALKDDFGFQSILWVF 493
             + RELVFDID+TDYD++R CC  A VC KCW  M +A ++ID +L++DFGF+ ILWVF
Sbjct: 110 TPVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIKVIDTSLREDFGFKHILWVF 169

Query: 494 SGRRGIHCWVSDYEARTLDSPGRGAIADY 580
           SGRRG+HCWV D +AR L +  R A+A+Y
Sbjct: 170 SGRRGVHCWVCDAKARRLTNEQRSAVAEY 198


>At5g44230.1 68418.m05411 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 657

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 332 LVFDIDLTDYDEIRTCCQEARVCEKCWKFMVIACEIIDKAL 454
           L F +  T+ D   T  +  R+C  C KFM +A E+  K +
Sbjct: 595 LAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVI 635


>At1g29330.1 68414.m03585 ER lumen protein retaining receptor (ERD2)
           / HDEL receptor identical to SP:P35402 ER lumen protein
           retaining receptor (HDEL receptor) {Arabidopsis
           thaliana}
          Length = 215

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +2

Query: 413 KFMVIACEIIDKALKDDFGFQSILWVFS 496
           +++V+AC ++   L + F  Q + W FS
Sbjct: 98  QYVVLACFVLGLILNEKFTVQEVFWAFS 125


>At4g38260.1 68417.m05404 expressed protein contains Pfam PF05742:
           Protein of unknown function (DUF833)
          Length = 275

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
 Frame = -1

Query: 533 HNLIPNSEYH-----ADLKIPTGCFGTRS 462
           H   P +EYH      D++ PTG +GTRS
Sbjct: 201 HVFTPETEYHLSSIFVDMQRPTGRYGTRS 229


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,119,151
Number of Sequences: 28952
Number of extensions: 267746
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)