Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k06
         (659 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    29   0.045
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   0.96 
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   5.1  
AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash pro...    22   5.1  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   6.8  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   6.8  

>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 28.7 bits (61), Expect = 0.045
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
 Frame = +2

Query: 104 KTAKSQYLRQQPYSITPRQMPEYIE-GPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRL 280
           K  K+Q  + +P S T    P+ I+  P + D  +         SP   E   LI   RL
Sbjct: 269 KEKKAQKEKDKPNSTT-NGSPDVIKVEPELSDSEKTLCNGSKGISP---EQEELIH--RL 322

Query: 281 IESPRVIESPRIYEASRIINQPVITETPCNSVAPRVPSATIIT 409
           +      E P   +  RIINQP+  E  C+     +   TI+T
Sbjct: 323 VYFQNEYEHPSEEDVKRIINQPMDGEDQCDVRFRHITEITILT 365


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +3

Query: 393  RPR*LRTALRPSARTWPTQSS 455
            RP    T  RP+   WPTQ +
Sbjct: 1064 RPTTTSTTTRPTTTNWPTQGT 1084


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 626 VPNFITAAFNS 658
           +PNFI AAF S
Sbjct: 79  IPNFIAAAFES 89


>AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash
           protein protein.
          Length = 40

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 626 VPNFITAAFNS 658
           +PNFI AAF S
Sbjct: 19  IPNFIAAAFES 29


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 59  MSKFVLLLISMTIFDKTAKSQYLR 130
           +S F+L+ IS+  F    K  YLR
Sbjct: 139 LSSFILVCISVDRFYAVLKPLYLR 162


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 59  MSKFVLLLISMTIFDKTAKSQYLR 130
           +S F+L+ IS+  F    K  YLR
Sbjct: 139 LSSFILVCISVDRFYAVLKPLYLR 162


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,252
Number of Sequences: 336
Number of extensions: 3133
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)