Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k06
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789     30   1.4  
11_06_0388 + 23048576-23051546,23051830-23052371,23052444-230525...    29   2.5  
05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960           29   2.5  
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    29   4.3  
03_05_1142 - 30703333-30703469,30704058-30704205,30704893-307049...    28   5.7  
07_03_1654 - 28416487-28416548,28416791-28416824,28418156-284182...    28   7.6  
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570...    28   7.6  

>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
          Length = 877

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 177 KGPEFTTDQGSSRALDSTIVPGSSRVRGSLRALGSS 284
           +G   T   GSSR +   + PGSS  +G +R  G+S
Sbjct: 107 RGRSLTNGAGSSRGMRGFVPPGSSSGQGGVRGHGAS 142


>11_06_0388 +
           23048576-23051546,23051830-23052371,23052444-23052517,
           23053006-23053090,23053281-23053367,23053585-23053657,
           23053882-23053925,23054041-23054169,23054301-23054402,
           23054529-23054585
          Length = 1387

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/66 (21%), Positives = 32/66 (48%)
 Frame = +2

Query: 164 PEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEASRIINQ 343
           P   +  ++   P   +  +    P   +S ++I  P   +S ++I  P   ++ +II++
Sbjct: 334 PIETQSEKIISEPIDTQSEKIISEPIETQSEKIISEPIDAQSEKIISEPIEAQSEKIISE 393

Query: 344 PVITET 361
           P+ T+T
Sbjct: 394 PIDTQT 399


>05_01_0561 + 4905107-4905272,4905945-4906033,4906832-4906960
          Length = 127

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 454 LDCVGQVLADGRSAVRNYRGRWNPWSDTVAWCLGYHRLVDDP 329
           LD VG V ADG   +   + +W+P  D  A       L+ DP
Sbjct: 50  LDLVGYVYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDP 91


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -2

Query: 295 SRALDEPRALNEPRTLDEPGTIVESRALEDP 203
           +R +D PR ++ PR +D P  I   R ++ P
Sbjct: 270 ARTIDPPRPIDPPRPIDPPRPIDPPRPIDPP 300


>03_05_1142 -
           30703333-30703469,30704058-30704205,30704893-30704963,
           30705189-30705285,30705371-30705562,30705639-30705977
          Length = 327

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 220 RALEDPWSVVNSGPFDV---FRHLSWSYAVGLLPEILRFCCL-IKYSHRNQQQNKL 65
           RAL+D    V   P +V   +R    + A+GLLPE   FC   I+    N++  KL
Sbjct: 96  RALDDAARAVQLSPSNVKAYYRAAKAAIALGLLPEAAAFCRRGIEQDPANEELKKL 151


>07_03_1654 -
           28416487-28416548,28416791-28416824,28418156-28418212,
           28418401-28418450,28418968-28419025,28419136-28419182,
           28419278-28419377,28419446-28419586,28419715-28419780,
           28420024-28420118,28420440-28420629
          Length = 299

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +2

Query: 152 PRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESP 256
           P Q+  Y    RVYD  R  + PR   SPRL  SP
Sbjct: 3   PNQLRPYEYTTRVYD-VRHDQTPRLVSSPRLASSP 36


>04_03_0925 -
           20856628-20856690,20856786-20856845,20856924-20857001,
           20857127-20857192,20857542-20858675,20858991-20860283
          Length = 897

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = +2

Query: 473 LLQNTKGGPELALQLASPVLNEVFTSPVFSCGC-PNPFSPNVVS----PKAVSP 619
           +++  K G +L +    P  N     P+F+  C PNP  PNVV     P AV+P
Sbjct: 283 VIRRKKPGAKLEVYAFQPRHNH----PLFATSCMPNPLQPNVVHWTTLPDAVTP 332


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,789,016
Number of Sequences: 37544
Number of extensions: 358331
Number of successful extensions: 1086
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)