Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k06
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032654-11|CAB63389.2| 529|Caenorhabditis elegans Hypothetical... 33 0.14
AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical... 30 1.3
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 29 2.2
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 29 2.2
AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein. 29 2.2
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter... 29 2.9
Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical pr... 28 5.1
AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical ... 28 5.1
Z70270-10|CAA94231.1| 726|Caenorhabditis elegans Hypothetical p... 27 8.9
Z68215-17|CAA92458.1| 726|Caenorhabditis elegans Hypothetical p... 27 8.9
U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormon... 27 8.9
U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormon... 27 8.9
AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear recep... 27 8.9
>AL032654-11|CAB63389.2| 529|Caenorhabditis elegans Hypothetical
protein Y52B11A.7 protein.
Length = 529
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +2
Query: 503 LALQLASPVLNEVFTSPVFSCGCPNPFSPNVVSPKAVSPSMV-PNFITAAFNS 658
L+ Q+ +P++ F F P+ SP ++SP A+SPS++ P+F+TA S
Sbjct: 453 LSPQVMTPIILSPFALSPFIL-TPSALSPLILSPFALSPSILSPSFVTAVIMS 504
>AF016684-13|AAB66203.1| 470|Caenorhabditis elegans Hypothetical
protein F45C12.3 protein.
Length = 470
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 283 DEPRALNEPRTLDEPGTIVESRALEDPWSVVNSGPF 176
+EPR E + L EPG E+ LE P + NS F
Sbjct: 296 EEPREYEEDKKLKEPGEHEETEKLEKPNKLENSKKF 331
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 271 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 101
AL E GT+ + + PWSV+ +G R +W +GL P++ R C +
Sbjct: 315 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 368
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 271 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 101
AL E GT+ + + PWSV+ +G R +W +GL P++ R C +
Sbjct: 315 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 368
>AF023470-1|AAB86814.1| 183|Caenorhabditis elegans CEH-21 protein.
Length = 183
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 271 ALNEPRTLDEPGTIVESRALEDPWSVVNSGPFDVFRHLSWSYAVGLLPEILRFCCLI 101
AL E GT+ + + PWSV+ +G R +W +GL P++ R C +
Sbjct: 3 ALAEKILARSQGTLSDLLRMPKPWSVMKNGRATFQRMSNW---LGLDPDVRRALCFL 56
>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 6 protein.
Length = 1254
Score = 29.1 bits (62), Expect = 2.9
Identities = 20/78 (25%), Positives = 24/78 (30%)
Frame = +2
Query: 149 TPRQMPEYIEGPRVYDGPRIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRIYEAS 328
T + P EG P E + P E P G E E P E S
Sbjct: 491 TTTEKPVITEGSTTNKQPTTSEHESTTEVPTTTEEPTTTTGQHKTEKAITTEEPTTTEES 550
Query: 329 RIINQPVITETPCNSVAP 382
+ TE P N+ P
Sbjct: 551 STTEEVTTTEEPANTGNP 568
>Z48795-1|CAA88725.1| 372|Caenorhabditis elegans Hypothetical
protein R05H5.2 protein.
Length = 372
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 203 RIFEGPRFYDSPRLIESPRLIEGPRLIESPRVIESPRI-YEASRIINQPVITE 358
RIF D P++I+ P E P E PR +R++ +P TE
Sbjct: 318 RIFSSEHLLDEPKMIDVPSGYERPTGAEETSTPRQPRARTPRARLLFEPCFTE 370
>AF040640-1|AAD34652.1| 602|Caenorhabditis elegans Hypothetical
protein F09D1.1 protein.
Length = 602
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +2
Query: 293 RVIESPRIYEASRIINQPVITETPCNSVAPRVPSATII 406
+VIESP +Y + + P+ + ++ P+VP +T++
Sbjct: 412 KVIESPFLYLTLDLPSAPLYRDVQLQNIIPQVPLSTLL 449
>Z70270-10|CAA94231.1| 726|Caenorhabditis elegans Hypothetical
protein C53B4.8a protein.
Length = 726
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 539 VFTSPVFSCGCPNPFSPNVVSPKAVSPSMVPNFI 640
VF + VFS P SPNV++P +SP ++ F+
Sbjct: 654 VFNAYVFS---PYVLSPNVINPYVMSPLILSPFV 684
>Z68215-17|CAA92458.1| 726|Caenorhabditis elegans Hypothetical
protein C53B4.8a protein.
Length = 726
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 539 VFTSPVFSCGCPNPFSPNVVSPKAVSPSMVPNFI 640
VF + VFS P SPNV++P +SP ++ F+
Sbjct: 654 VFNAYVFS---PYVLSPNVINPYVMSPLILSPFV 684
>U61947-14|ABA29341.1| 413|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform b protein.
Length = 413
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 431 KNLANTIQLMIICNLLQNTKGGPELALQLASPVLNEVFTSPVFSCGCPNPFSPNVV 598
KN + QL I + + N GG E Q A+ L E+ + VF+ +P+S NV+
Sbjct: 354 KNGMDPEQLPIRVSEILNLTGGVE---QCAARALEEMHPTRVFNLSSFDPYSSNVI 406
>U61947-13|AAB03131.3| 429|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 105, isoform a protein.
Length = 429
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 431 KNLANTIQLMIICNLLQNTKGGPELALQLASPVLNEVFTSPVFSCGCPNPFSPNVV 598
KN + QL I + + N GG E Q A+ L E+ + VF+ +P+S NV+
Sbjct: 370 KNGMDPEQLPIRVSEILNLTGGVE---QCAARALEEMHPTRVFNLSSFDPYSSNVI 422
>AY204189-1|AAO39193.1| 429|Caenorhabditis elegans nuclear receptor
NHR-105 protein.
Length = 429
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +2
Query: 431 KNLANTIQLMIICNLLQNTKGGPELALQLASPVLNEVFTSPVFSCGCPNPFSPNVV 598
KN + QL I + + N GG E Q A+ L E+ + VF+ +P+S NV+
Sbjct: 370 KNGMDPEQLPIRVSEILNLTGGVE---QCAARALEEMHPTRVFNLSSFDPYSSNVI 422
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,173,458
Number of Sequences: 27780
Number of extensions: 310222
Number of successful extensions: 1049
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1040
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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