Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k04
         (701 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0526 - 24585161-24587119                                         29   3.6  
01_06_0638 - 30768546-30768779,30768908-30769017,30769301-307694...    29   3.6  
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153     28   6.2  
12_02_0370 + 18139557-18140469,18140561-18140704,18140804-181409...    28   8.3  
11_06_0157 - 20754134-20755085,20755311-20755642                       28   8.3  

>11_06_0526 - 24585161-24587119
          Length = 652

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 22/63 (34%), Positives = 32/63 (50%)
 Frame = +2

Query: 173 GIGRLFHKKCGINDSTTIYGFCTTQDVDIFLRHMNNARYVRELDFARFHFYDRTGIYTNI 352
           G+ R FH K    ++TT     TT  V +   H N+  Y++E D AR H +   G +TN 
Sbjct: 355 GLPRPFHLKSPAPETTT-----TTTAVSL---HFNSDYYLKE-DTARVHSWRFIGNFTNA 405

Query: 353 KAV 361
           K +
Sbjct: 406 KTL 408


>01_06_0638 -
           30768546-30768779,30768908-30769017,30769301-30769490,
           30769842-30769914,30770007-30770063,30770147-30770211,
           30770278-30770488,30770568-30770650,30771123-30771158,
           30771611-30771713,30771813-30771899,30772210-30772403
          Length = 480

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 49  HRFNCLKGL-ISEYNVLYSSDDCGPSIHILG 138
           H   CL GL +S+Y+ +  SD C    H+LG
Sbjct: 421 HSCYCLSGLSVSQYSAMVDSDACPLPQHVLG 451


>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
          Length = 1112

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
 Frame = +2

Query: 143 NYFLRVAFTIGIGR---LFHKKCGINDSTTIYGFCTTQDVDIFLRHMNNARYVRELDFAR 313
           +++LRV F IG+ R     H++C    ST I   C  +  +I L +   A+ + +   A+
Sbjct: 605 SWYLRVQFAIGVARGLLYLHEEC----STQII-HCDIKPQNILLDNNLTAK-ISDFGLAK 658

Query: 314 FHFYDRTGIYTNIKAVDGH 370
               D+T  +T I+   G+
Sbjct: 659 LLRMDQTQTHTGIRGTRGY 677


>12_02_0370 +
           18139557-18140469,18140561-18140704,18140804-18140956,
           18141032-18141147,18141231-18141398,18142110-18142334,
           18142458-18142577
          Length = 612

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = -3

Query: 606 IQVX*SAPGIPLNSAAASTLRRFCRDNTMALTKPSFRVI 490
           +Q+  SAP  PL+SA  S LR+F   N   L K + RVI
Sbjct: 408 LQMSGSAPDKPLDSAVLSRLRQFSAMN--KLKKMALRVI 444


>11_06_0157 - 20754134-20755085,20755311-20755642
          Length = 427

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 285 LALFMCLKKMSTS*VVQKP*IVVESLIPHFLWNNLPIPI 169
           L LF C K    + V+      +E ++   LW+N P+PI
Sbjct: 374 LYLFRCKKNRRDTGVLDLENDTIEPIVSPELWSNWPVPI 412


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,949
Number of Sequences: 37544
Number of extensions: 374001
Number of successful extensions: 767
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)