Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k04
         (701 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.)             101   6e-22
SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_48712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score =  101 bits (242), Expect = 6e-22
 Identities = 50/141 (35%), Positives = 85/141 (60%)
 Frame = +2

Query: 113 VALAYIFWDVNYFLRVAFTIGIGRLFHKKCGINDSTTIYGFCTTQDVDIFLRHMNNARYV 292
           V L ++F+DV Y LRV +     R+ + +  + D + +       D+D+FL HMNN+RY+
Sbjct: 32  VPLMFMFFDVGYSLRVVWLWVKMRMMNYRVDLMDKSVMTFHVLPSDLDVFL-HMNNSRYL 90

Query: 293 RELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLVYWEDKTL 472
           R LDFAR+  +  +G+ + ++      +  A++IRYRR++ +F   K+ TK+VYW+D+  
Sbjct: 91  RALDFARYEHFLGSGMSSVLRKHKCRFILAATTIRYRRSLELFQKIKLTTKIVYWDDRAF 150

Query: 473 FIEQKFITLNDGFVRAIVLSR 535
           + E  FI   +GFV A+  S+
Sbjct: 151 YFEHHFID-EEGFVSAVAFSK 170


>SB_4198| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 552 WTQLHYSRVFQELIXKPECPEEIKHW 629
           W  L++ R FQE++   E    + HW
Sbjct: 218 WRNLYWQRHFQEVVNSTEAKTAVVHW 243


>SB_52825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1141

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/49 (20%), Positives = 21/49 (42%)
 Frame = +1

Query: 31  TFYNSIHRFNCLKGLISEYNVLYSSDDCGPSIHILGCKLFFEGCIHNRY 177
           + +N++H    +  ++    + Y  D  G    + GC   F G  H+ +
Sbjct: 31  SLWNNVHEHPYISAMVGNGTLPYDHDRDGTHSQVEGCSAQFRGLTHDTF 79


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,632,666
Number of Sequences: 59808
Number of extensions: 448698
Number of successful extensions: 965
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)