Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k04
         (701 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   4.9  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   4.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.6  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 338 IYTNIKAVDGHALQGASSIRYRRTIPIFSPY 430
           IY    A     L    S+ Y   IP+FSP+
Sbjct: 136 IYVQPSATFSLDLNKVVSVFYTAVIPMFSPF 166


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -2

Query: 355 FYICIDTSPIVEMESRKI*FPHISGIIHVPQENVNVLSSAKA 230
           FY   D S  ++     +   H +G++H   +  N+L ++KA
Sbjct: 5   FYSEADASHCIQQILESVHHCHHNGVVHRDLKPENLLLASKA 46


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 325 RSDWYLYKYKSCGRSRSTRSLEYPLSKNYTNF 420
           R+ W++  ++   + R   +   P +KNYT F
Sbjct: 422 RNPWFVEFWEHHFQCRYPNASVTPYNKNYTKF 453


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -2

Query: 262 ENVNVLSSAKAVNCSRIIDSTFLME*SSNTYCECNP 155
           EN N    +  +NC      T L++     +CE +P
Sbjct: 22  ENDNEFGFSYLLNCKNYDHPTTLLKLKRYLFCEYDP 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,194
Number of Sequences: 438
Number of extensions: 4850
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)