Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k04
         (701 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa...    30   1.3  
At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase f...    29   3.0  
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam...    28   6.9  
At3g57290.1 68416.m06377 eukaryotic translation initiation facto...    27   9.1  

>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
            protein contains Pfam profile: PF00097 zinc finger, C3HC4
            type (RING finger)
          Length = 4706

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 357  LWTVTLYKEPRVSVIEELYQFSAHTKLKLSWFTGR 461
            +W VTL  EP  S++ +LY F A+  L++ +   R
Sbjct: 1843 VWPVTLGTEPWASLVRKLYSFIANNGLRVLYTKAR 1877


>At4g31670.1 68417.m04497 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 631

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 280 CQICEGIRFCEIPFLRSDWYLYKYKSCGRSRSTRSLEYPLSKNYTNFQ 423
           C  C+ +R+C     RSDW     ++C R     +L  P +KN   F+
Sbjct: 72  CSRCKSVRYCSAECQRSDWSSGHQRNC-RDYGITTLT-PSAKNGLRFR 117


>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
           beta-monooxygenase N-terminal domain-containing protein
           contains Pfam PF03351: DOMON domain
          Length = 907

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 347 NIKAVDGHALQGASSIRYRRTI 412
           N K V GH + G S +RYRR +
Sbjct: 284 NTKLVYGHRIDGVSFVRYRRPL 305


>At3g57290.1 68416.m06377 eukaryotic translation initiation factor
           3E / eIF3e (TIF3E1) identical to eukaryotic initiation
           factor 3E subunit [Arabidopsis thaliana]
           gi|12407658|gb|AAG53613
          Length = 441

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -2

Query: 490 KLLLDEKSFILPVNQLSFNFVWAENW 413
           K ++D KSF  P+NQ+  N +W  +W
Sbjct: 195 KEIIDSKSFSSPLNQVQ-NRIWLMHW 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,310,393
Number of Sequences: 28952
Number of extensions: 327321
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)