Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10k03
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1139 - 30689514-30689609,30689795-30689956,30691245-306912... 31 0.93
01_06_1556 - 38222071-38222708,38222795-38222822,38222950-382230... 30 1.6
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 30 2.1
04_01_0082 + 897026-897028,897101-897350,898454-898608,898686-89... 29 2.8
05_03_0086 + 8279518-8280320,8280923-8281844 29 3.7
03_05_0955 + 29168771-29170507 29 3.7
02_01_0110 + 819022-819264,819996-820761,820846-820920,821276-82... 29 3.7
01_03_0255 - 14281004-14281066,14281114-14281203,14281672-142817... 29 3.7
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805... 29 4.9
11_06_0291 + 22008412-22012284 28 6.5
02_04_0313 - 21947115-21948021,21948102-21948172 28 6.5
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 6.5
01_06_0685 - 31218716-31218873,31218974-31219266,31219366-312195... 28 6.5
>03_05_1139 -
30689514-30689609,30689795-30689956,30691245-30691299,
30691695-30691959,30692749-30692959,30693542-30693721,
30693802-30693899,30694211-30694277,30694897-30694963,
30695335-30695447,30695988-30696032,30696116-30696223,
30696582-30696791,30697464-30697670,30697786-30697875,
30698168-30698389
Length = 731
Score = 31.1 bits (67), Expect = 0.93
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 14 HLANVTSLQQQQQADREERGAQRKAE-PSRPSPEHNSPQHSASTTSNEVKTTPESKSVDP 190
HL++ ++ + A E R A + A PS P P H + +TT + + PES S D
Sbjct: 14 HLSSNSNPSSSKLAKLEARMAGKAAPVPSPPPPHHLVVPSAPATTFMDQEELPESSSSDD 73
Query: 191 SN 196
N
Sbjct: 74 DN 75
>01_06_1556 -
38222071-38222708,38222795-38222822,38222950-38223070,
38223206-38223318,38223424-38223506,38223868-38223930,
38224100-38224254,38224411-38224580,38225101-38225189,
38225304-38225496,38225655-38225779,38226069-38226475,
38226855-38226919,38227414-38227692,38227772-38227845,
38228241-38228292,38228366-38228473,38228871-38228972,
38229100-38229173,38229262-38229435,38229667-38229771,
38229867-38229977,38230364-38230487
Length = 1150
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 568 RHNEGIPSCTSIVLALACKFLIK 636
R N G PSC+ + +AC FLIK
Sbjct: 296 RRNSGGPSCSICKIGIACSFLIK 318
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +2
Query: 20 ANVTSLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPS 193
++V +++ A R G +R S+PSPE NS + S + + SVD S
Sbjct: 293 SDVVDSARRRMARRNSLGNERTVTFSKPSPERNSVSSTRSIKEYTTTQSVKGLSVDSS 350
>04_01_0082 +
897026-897028,897101-897350,898454-898608,898686-898967,
899078-899160,899335-899485,899896-899952,900279-900479
Length = 393
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +2
Query: 38 QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTT 166
QQQQ AD + Q+K EPS S E + ++ + ++ + + T
Sbjct: 254 QQQQPADAHRKQQQQKQEPSESSSERITMKNLPNPSNQDQRKT 296
>05_03_0086 + 8279518-8280320,8280923-8281844
Length = 574
Score = 29.1 bits (62), Expect = 3.7
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +2
Query: 23 NVTSLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPES 175
N TS ++ Q R A K P + S N P H + T+N PE+
Sbjct: 17 NRTSFEEDDQFSI--RSAPSKPSPDKKSKPKNKPNHHSDKTANPPPQRPET 65
>03_05_0955 + 29168771-29170507
Length = 578
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/53 (26%), Positives = 22/53 (41%)
Frame = +2
Query: 38 QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 196
QQQQQ +++R P P P+ +P H + + P PS+
Sbjct: 21 QQQQQQQQQQRHHHHHHLPPPPPPQSMAPHHHQQKHHHHHQQMPAMPQAPPSS 73
>02_01_0110 +
819022-819264,819996-820761,820846-820920,821276-821445,
821644-821742,821835-822134,822211-822318,822443-822514,
822580-822666,822887-822958,823063-823152,823795-823902,
824015-824083,824177-824242,824395-824418
Length = 782
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 35 LQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPS 193
L++ A+R+E+ ++ E S+P + NSP S +N + P + P+
Sbjct: 111 LREFMDANRQEQTSESPEETSKPMVDKNSPSMSRPVQTNAKQDEPALTLLRPA 163
>01_03_0255 -
14281004-14281066,14281114-14281203,14281672-14281737,
14281837-14281907,14282021-14282153,14282245-14283898,
14285346-14285935
Length = 888
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/57 (26%), Positives = 23/57 (40%)
Frame = +2
Query: 20 ANVTSLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDP 190
A+ TS D + R AEP+ PSP ++P V ++ + DP
Sbjct: 20 ASTTSFSASHYDDMFDSYFNRSAEPAEPSPSSSAPSPPPPVFDKPVFDDADADAADP 76
>02_05_1337 -
35780076-35780290,35780377-35780408,35780490-35780584,
35780670-35780743,35780851-35780986,35781072-35781135,
35781333-35781395,35781514-35781656,35781752-35781889,
35781973-35782094,35782210-35782375,35782647-35782652,
35782988-35783059,35783241-35783348,35783719-35783848,
35783964-35784070,35784896-35785005,35785302-35785435,
35785528-35785982,35786068-35786595
Length = 965
Score = 28.7 bits (61), Expect = 4.9
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 38 QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKS 181
Q QQQ ++ RG + + P P+ Q ST + T S S
Sbjct: 36 QPQQQQQQQGRGCRARGASPPPPPQQQQQQQPRSTPTRATTVTVASSS 83
>11_06_0291 + 22008412-22012284
Length = 1290
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 38 QQQQQADREERGAQRKAEPSRPSPEH 115
Q+++ D+E+ G +RK EP EH
Sbjct: 441 QEEEMKDKEKGGEERKEEPHHEKQEH 466
>02_04_0313 - 21947115-21948021,21948102-21948172
Length = 325
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Frame = +2
Query: 41 QQQQADREERGAQ--RKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPS 193
QQQQ ++ E Q R+ +PS P P SP ++ + V + PS
Sbjct: 206 QQQQGEQHELRVQIDRRDQPSSPEPPRRSPDPRSAQSFRRVASMGSRSPPAPS 258
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +2
Query: 35 LQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTT 145
LQQQQQ ++++ Q++ + + P+H+S Q +TT
Sbjct: 76 LQQQQQ--QQQQKLQQQQQQQQNQPQHSSQQSQQTTT 110
>01_06_0685 -
31218716-31218873,31218974-31219266,31219366-31219559,
31219666-31220409,31221504-31221824
Length = 569
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -1
Query: 189 GSTDFDSGVVLTSLEVVDAECWGLLCSGEGREGSAFLCAPLSSRSACCCCW 37
G+T+ D GV ++ + D + L+ G+ E A P CCW
Sbjct: 511 GATEEDDGVAISMVSAKDGSGYALVLDGKTFEEVARAKFPYGLPYGLHCCW 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,218,148
Number of Sequences: 37544
Number of extensions: 219384
Number of successful extensions: 786
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -