Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k03
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)                    31   1.2  
SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)                    29   3.8  
SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)                  29   5.0  
SB_34673| Best HMM Match : UK (HMM E-Value=0.6)                        29   5.0  
SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)                     28   6.7  
SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)               28   8.8  
SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_16838| Best HMM Match : TolA (HMM E-Value=2)                        28   8.8  
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  28   8.8  
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)           28   8.8  

>SB_38123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 196
           Q+QQ   R +  + R ++P R +P+H+      + TSN V    +   +D ++
Sbjct: 744 QRQQNRRRNQNKSGRGSKPPRDNPQHDPQYKGMNGTSNGVDHVTDLNGLDDTD 796


>SB_21078| Best HMM Match : P120R (HMM E-Value=0.44)
          Length = 585

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 23  NVTSLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKT 163
           N  +LQQQQ   ++++  Q++ +     P+H S Q  A    N+  T
Sbjct: 102 NPINLQQQQAQQQQQQQQQQQQQQPATQPQHTSLQAGAQPAPNQGST 148


>SB_43996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +2

Query: 32  SLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPS 193
           SL  Q+ +      +Q   E S+PSPEH+ P    S  S E  + P  +   PS
Sbjct: 756 SLPSQEHSLPSPEHSQPSPEHSQPSPEHSQPSPEHSQPSPE-HSQPSPEHCQPS 808



 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 74  AQRKAEPSRPSPEHNSPQHSASTTSNE-VKTTPESKSVDPSN 196
           +Q   E S+PSPEH+ P    S  S E  + +PE     P +
Sbjct: 742 SQPSPEHSQPSPEHSLPSQEHSLPSPEHSQPSPEHSQPSPEH 783


>SB_6245| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1000

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +2

Query: 20  ANVTSLQQQ---QQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNE-VKTTPES 175
           +N TS Q+    Q   REE  +   AEP  P P    P  S ST+S + +++ P S
Sbjct: 822 SNSTSSQRSLELQSPSREEGPSLITAEPPPPPPVARKPSRSNSTSSQQSIESAPGS 877


>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSA-STTSNEVKTTPESKSVDPSN**SN 208
           QQQQQ +++++  Q++ +  +    H   QH+  S ++N + +   S S   SN  SN
Sbjct: 80  QQQQQQEQQQQQQQQQQQQQQQQQPHQQ-QHNNNSNSNNNINSNRNSNSSSNSNSNSN 136



 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/58 (24%), Positives = 30/58 (51%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN**SNT 211
           QQ+QQ  ++++  Q++ +      +HN+  +S +  ++   +   S S   SN  SN+
Sbjct: 84  QQEQQQQQQQQQQQQQQQQQPHQQQHNNNSNSNNNINSNRNSNSSSNSNSNSNNNSNS 141


>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
          Length = 610

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 101 PSPEHNSPQHSASTTSNEVKTTPESKSVDPS 193
           P    ++PQH  +TT+N   T P + + +P+
Sbjct: 28  PHDSRSTPQHQRTTTANFPSTNPHNSTTNPT 58


>SB_13376| Best HMM Match : DUF1213 (HMM E-Value=0.18)
          Length = 1022

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/56 (19%), Positives = 31/56 (55%)
 Frame = +2

Query: 17  LANVTSLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSV 184
           L  V +++ +++AD ++ G + ++   + SP+    + S+   S  ++T  E +++
Sbjct: 407 LGQVAAIRDEEEADDDKIGMENESVEKKKSPKAKQTKPSSPLLSGRLETKEEERNL 462


>SB_34673| Best HMM Match : UK (HMM E-Value=0.6)
          Length = 641

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = +2

Query: 44  QQQADREERGAQRKAEPSRPSPEHNSPQHSASTTS-----NEVKTTPE 172
           Q+  D  ER  + K EP RP    + P     TT       EV TTP+
Sbjct: 86  QEITDVPERPQEAKDEPDRPQEATHEPDRPEETTDVPDRPQEVTTTPD 133


>SB_48826| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTS--NEVKTTPESKSVDPSN 196
           QQQQQ  ++++  Q++ +  +   +    QH+ S +S  N   TT  + + + +N
Sbjct: 32  QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQHNLSNSSDINNNNTTTSNNNNNNNN 86


>SB_40630| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2174

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 35   LQQQQQADREERGAQRKAEPSRP--SPEHNSPQHSASTTSNEVKTTPESKSVDPS 193
            L+Q    +  ER + R + P+ P  +P H    H A  +S + ++  E +  D S
Sbjct: 1349 LEQVLTRESRERSSLRSSRPTAPLPTPGHRPEPHGAQYSSGQEQSNNEVERADSS 1403


>SB_30283| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1417

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 92   PSRPSPEHNSPQHSASTTS-NEVKTTPESKSVDPS 193
            P +PSP  N  + S STTS   +K +P +  + PS
Sbjct: 1275 PIKPSPSTNPIKPSPSTTSTTPIKPSPSTTPIKPS 1309


>SB_379| Best HMM Match : ADK (HMM E-Value=3.2e-05)
          Length = 991

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 17  LANVTSLQQQQQADREERG-AQRKAEPSRPSPEHNSPQ 127
           ++ VT+ +QQ+QA+ EE+G A++ AE      E    +
Sbjct: 378 ISKVTAARQQEQAEDEEKGSAEKTAEEEEKGSEEEKAE 415


>SB_50629| Best HMM Match : Extensin_2 (HMM E-Value=0.94)
          Length = 450

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 20  ANVTSLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPS 193
           A V+  Q+ Q   R +   +R+++    SP+H SP+   S T N   T+   +S  P+
Sbjct: 367 APVSQRQRSQSPQRVQASPRRRSQ----SPDHVSPRRK-SQTPNRASTSTRQQSRSPN 419


>SB_42365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 791

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +2

Query: 41  QQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEV---KTTP--ESKSVDPS 193
           + + +DR+ER   R+A+P+  +P+ +    S +  S  V   + TP  E K  +PS
Sbjct: 67  RSRDSDRKERERPRRAKPAEKTPDESGKVRSKTKDSGSVIDPQGTPLKEVKPEEPS 122


>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
          Length = 371

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSV 184
           QQQ+Q  ++ +  Q++ +P +PS     P H      N  + T ES+ +
Sbjct: 102 QQQRQPQQKSQQQQQQQQPQQPSHGQQEP-HQRRLFQNGQQATHESEQL 149


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 41  QQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTT 166
           Q +QA R  R A RK + S+P  +    + +   TS+ +KT+
Sbjct: 153 QDKQAARP-RQASRKTKTSKPQDQDKQDKQATRPTSHRIKTS 193


>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
          Length = 773

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEH 115
           QQQQQ  ++++  Q++ +PS  +PE+
Sbjct: 429 QQQQQQQQQQQQQQQEKQPSEKAPEN 454


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,919,347
Number of Sequences: 59808
Number of extensions: 270593
Number of successful extensions: 993
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)