Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10k03
         (723 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro...    32   0.44 
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co...    30   1.8  
At4g37820.1 68417.m05351 expressed protein Kaposi's sarcoma-asso...    28   5.5  
At1g17440.2 68414.m02133 transcription initiation factor IID (TF...    28   5.5  
At1g17440.1 68414.m02132 transcription initiation factor IID (TF...    28   5.5  
At5g54430.1 68418.m06779 universal stress protein (USP) family p...    28   7.2  
At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase fami...    28   7.2  
At3g58160.1 68416.m06485 myosin heavy chain, putative similar to...    27   9.5  

>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
           [Rhodococcus sp.] GI:8926386; contains Interpro entry
           IPR000379
          Length = 392

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
 Frame = +2

Query: 74  AQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPES--KSVDPSN**SNTYRLLALKLYNLK 247
           +++K++  +    +N PQ S S++S++  T PES   S DP    ++T +LL+  L NL 
Sbjct: 298 SKKKSDEEKDDRNNNMPQDSGSSSSDQSPTFPESSGSSNDPPL-PTDTIQLLSSSLNNLI 356

Query: 248 T**FYRRVF*RFKTCDIFNINHLCNIYFLFCTGYI 352
                  V   +++C +F + + C +  +   G+I
Sbjct: 357 LVQLAGEV---YQSCVVFTLCY-CTLVLVHGGGFI 387


>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
           contains seven G-protein beta WD-40 repeats; beta
           transducin-like protein, Podospora anserina, gb:L28125;
           contains Pfam profiles PF04503:  Single-stranded DNA
           binding protein, SSDP; PF00400:WD domain, G-beta repeat;
           identical to cDNA LEUNIG (LEUNIG) GI:11141604
          Length = 931

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNE 154
           QQQQQ  ++++   +   PS+   + ++PQH    T  +
Sbjct: 143 QQQQQQQQQQQQQHQNQPPSQQQQQQSTPQHQQQPTPQQ 181


>At4g37820.1 68417.m05351 expressed protein Kaposi's
           sarcoma-associated herpes-like virus ORF73gene, Kaposi's
           sarcoma-associated herpesvirus, U52064
          Length = 532

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = +2

Query: 38  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 196
           ++++   RE+  +  + E     PE+   + S+S   NE+K T E K  + S+
Sbjct: 349 KEEEPEKREKEDSSSQEESKEEEPENKEKEASSSQEENEIKET-EIKEKEESS 400


>At1g17440.2 68414.m02133 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 92  PSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 187
           P  PSP  ++P  S+S+   ++ T P S SV+
Sbjct: 20  PMEPSPASSTPLPSSSSQQQQLMTAPISNSVN 51


>At1g17440.1 68414.m02132 transcription initiation factor IID
           (TFIID) subunit A family protein similar to SP|Q16514
           Transcription initiation factor TFIID 20/15 kDa subunits
           (TAFII-20/TAFII-15) {Homo sapiens}; contains Pfam
           profile PF03847: Transcription initiation factor TFIID
           subunit A
          Length = 683

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 92  PSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 187
           P  PSP  ++P  S+S+   ++ T P S SV+
Sbjct: 20  PMEPSPASSTPLPSSSSQQQQLMTAPISNSVN 51


>At5g54430.1 68418.m06779 universal stress protein (USP) family
           protein low similarity to early nodulin ENOD18 [Vicia
           faba] GI:11602747, ER6 protein [Lycopersicon esculentum]
           GI:5669654; contains Pfam profile PF00582: universal
           stress protein family
          Length = 242

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 101 PSPEHNSPQHSASTTSNEVKTTP 169
           PSP H+   HS+ST S+    TP
Sbjct: 20  PSPRHSHHHHSSSTPSSAATPTP 42


>At1g68720.1 68414.m07851 cytidine/deoxycytidylate deaminase
          family protein contains Pfam profile PF00383: Cytidine
          and deoxycytidylate deaminase zinc-binding region
          Length = 1307

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 78 CAPLSSRSACCCC 40
          C  +SSRS+CCCC
Sbjct: 43 CYCVSSRSSCCCC 55


>At3g58160.1 68416.m06485 myosin heavy chain, putative similar to
            myosin heavy chain [Arabidopsis thaliana]
            gi|602328|emb|CAA84067.
          Length = 1242

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 29   TSLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKT 163
            +S+   +Q+D EE G +RK + S  S + +S Q       +E KT
Sbjct: 934  SSVLHSEQSDDEELGHERKTKLSIESEDGHSDQSDDEEIEHERKT 978


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,205,202
Number of Sequences: 28952
Number of extensions: 193014
Number of successful extensions: 644
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)