Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j22
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    27   2.9  
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    26   3.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.0  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   6.6  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    25   8.8  
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc...    25   8.8  
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ...    25   8.8  
SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase Ark1|Schizosa...    25   8.8  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   8.8  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   8.8  
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz...    25   8.8  

>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/80 (21%), Positives = 33/80 (41%)
 Frame = +1

Query: 55  ETQKMAKNYVTNFRGESFFTPNAKMNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLS 234
           + +++  +Y      +S  TP   +  K    TP  E      + D +E+D     + + 
Sbjct: 89  QMERLNSSYDLLIEPQSHETPGKPLKKKSRSKTPKREIARRQRDEDEWESD--EYEEVVD 146

Query: 235 MNDIAALREDLVKLEFSDHD 294
            +    + ED V  +F +HD
Sbjct: 147 GSASHPIEEDSVSTDFQNHD 166


>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 657

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 142 EPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMNDIAAL 255
           + + P+ E  G+HN  DSY++   S RK +    +  L
Sbjct: 53  DKLQPLLETIGKHNLSDSYDHGRVSKRKMVGFAVVVVL 90


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 193 SYENDYGSMRKSLSMNDIAALREDLVKLEFSDHDDVYQ 306
           S+EN Y   RK+ S ND+     D    E  DHD+ ++
Sbjct: 23  SFENIYDPARKNESTNDVIDNHTD---TEIDDHDNDHE 57


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 136  KDEPVTPIEEDFGEHNNLDS--YENDYGSMRKSLSMNDIAALREDLVKLEFSDHDDV 300
            KDEP+   E+   E+N LD    ++D+  + +     +     E++ + E S  D V
Sbjct: 4124 KDEPMQDFEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGV 4180


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 283 SDHDDVYQRYRRPTAGPQELSKTKFVSMAEAIYHYQRDT 399
           ++ +  Y RY   T  PQ+ SK+ F ++ + ++   R T
Sbjct: 151 TEREFAYMRYSAATCDPQDFSKSLF-TLRQPLFFQPRKT 188


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -2

Query: 249 CNVVH*Q*FSHRAVIVLVTIQIIMFTKVFFNR----SDRFVFYIHFSIRCEKTFTT 94
           CN V    F   ++I LV   I +F  + F R    SD +  YI+ ++  E TFT+
Sbjct: 273 CNYVS---FMVGSIIFLVVYWIGIFIWIGFGRMLGWSDEWQLYINTAVAVELTFTS 325


>SPAC25A8.01c ||snf2SR|fun thirty related protein
           Fft3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 922

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 160 EEDFGEHNNLDSYENDYGSMRKSLSMNDIAALREDLVK 273
           E +  + +N D Y +D  +  +  S  D AAL+E+++K
Sbjct: 206 EPEADDDSNDDMYSDDDSNADRWASRIDTAALKEEVLK 243


>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 305 KDIGDRQRDHKNCPKRSLCPWQRLYTIIKE 394
           K +GDR++ + +C   +LC  +R    I E
Sbjct: 380 KKMGDREKKYVHCLNSTLCATERALCCILE 409


>SPCC320.13c |ark1|aim1, SPCC330.16|aurora-B kinase
           Ark1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +1

Query: 274 LEFSDHDDVYQRYRRPTAGPQELSKTKFVSMAEAIYHYQR 393
           LEF+   ++YQ  RR     +E++      MA A+ +  +
Sbjct: 166 LEFAGRGELYQHLRRAKRFSEEVASKYIFQMANALSYLHK 205


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 359 CPWQRLYTIIKEILRV 406
           CPW R Y + +E+ R+
Sbjct: 225 CPWHRQYKVEREVSRI 240


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 184 NLDSYENDYGSMRKSLSMNDIAALREDL 267
           N DSYEND  + RK     ++  L E L
Sbjct: 385 NYDSYENDPFASRKQRQETEVRQLLEKL 412


>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 674

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 6/106 (5%)
 Frame = +1

Query: 43  FVYFET-QKMAKNYVTNFRGESFFTPNAKMNIKDEPVTPIEEDFGEHNNLDSYENDYGSM 219
           F  FE  QK  +   T F+    F P +K     +  T  E+ FG+H  ++S   D   +
Sbjct: 247 FAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKRRL 306

Query: 220 RKSLSMNDIAALRE---DLVKLEFS--DHDDVYQRYRRPTAGPQEL 342
           +    + D     +   DL+KLE S  D + + + Y +  A   E+
Sbjct: 307 QYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVPEV 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,476,536
Number of Sequences: 5004
Number of extensions: 50495
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)