Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j22
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0140 + 7125914-7126264,7126426-7126677,7126766-7126861,712...    29   2.2  
12_02_0482 + 19541017-19541139,19542687-19542765,19542971-195430...    29   3.9  
10_05_0003 - 7715935-7716336,7716360-7716890                           29   3.9  
03_05_0211 - 22020515-22020687,22020801-22020831,22022060-220221...    27   9.0  

>02_02_0140 +
           7125914-7126264,7126426-7126677,7126766-7126861,
           7127013-7127187,7127283-7127363,7127451-7127548,
           7127828-7127920,7128607-7128678,7128998-7129117,
           7129210-7129260,7130026-7130211,7130355-7130411
          Length = 543

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +1

Query: 316 RPTAGPQELSKTKFV---SMAEAIYHYQRDTPGRFRSTKPQIFRTQGRAGP 459
           RP + P  L   + V   S+A A  HY   TPGR R   P + R +    P
Sbjct: 42  RPPSPPSPLPGGRGVPHSSLAAASRHYASSTPGRRRRAPPMLLRRRRARRP 92


>12_02_0482 +
           19541017-19541139,19542687-19542765,19542971-19543025,
           19543179-19543268,19543344-19543413,19543580-19543850,
           19543969-19544026,19544113-19544237,19544326-19544397,
           19544484-19544617
          Length = 358

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +1

Query: 25  REYTFYFVYFETQKMAKNY-VTNFRGESFFTPNAKMNIKDEPVT-PI-EEDFGEHNNLDS 195
           R YT Y VYF+      N+     + E FFT N  +   ++P+  PI  +   E   L +
Sbjct: 163 RNYTIYGVYFQPNYWKLNFRAIKRQYECFFTRNTIVESYNQPLQFPIYPKQLTEFGELSA 222

Query: 196 YEN 204
           Y N
Sbjct: 223 YYN 225


>10_05_0003 - 7715935-7716336,7716360-7716890
          Length = 310

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 226 SLSMNDIAALREDLVKLEFSDHDDVYQRYRRPTAGPQELSKTKF 357
           SLS+   A    D  KL+F+  D   Q  R    GP EL KT +
Sbjct: 17  SLSVTSSATPSSDATKLDFAAADVACQFGRVDALGPVELRKTAY 60


>03_05_0211 -
           22020515-22020687,22020801-22020831,22022060-22022169,
           22022715-22023102,22023344-22023397,22023739-22023849,
           22023956-22024015,22024618-22024694,22026155-22026188,
           22026267-22027235
          Length = 668

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +1

Query: 73  KNYVTNFRGESFFTPNAKMNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMN 240
           K+    F  +   TP+ K N   E  T  +ED  +    DS E+DY S ++    N
Sbjct: 431 KSSSKKFDDDDDITPSKKRNKALEYDTDEDEDDADPMKSDSEEDDYDSEKEKAKKN 486


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,196,843
Number of Sequences: 37544
Number of extensions: 293729
Number of successful extensions: 660
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)