Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov10j22
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09) 40 0.002
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 32 0.43
SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 5.3
SB_51400| Best HMM Match : Kinesin (HMM E-Value=0) 28 5.3
SB_39336| Best HMM Match : Kinesin (HMM E-Value=0) 28 5.3
SB_11742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_6116| Best HMM Match : Patched (HMM E-Value=0.025) 27 9.2
>SB_3407| Best HMM Match : TPX2 (HMM E-Value=2.9e-09)
Length = 787
Score = 39.9 bits (89), Expect = 0.002
Identities = 25/59 (42%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 355 FVSMAEAIYHYQRDTPGRFRSTKPQ-----IFRTQGRAGPNGLTVPQSPMLRCKARSRP 516
FVSMAE Y +Q TP RFRS + Q +Q GLT P++P L R RP
Sbjct: 435 FVSMAERCYTFQTKTPPRFRSRRSQEQSEDDVPSQHGKQKKGLTCPKTPNLTTSDRHRP 493
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 31.9 bits (69), Expect = 0.43
Identities = 27/105 (25%), Positives = 44/105 (41%)
Frame = +1
Query: 82 VTNFRGESFFTPNAKMNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMNDIAALRE 261
VTN ES+ K+ + E + + D E + + S N+I LR
Sbjct: 1528 VTNLE-ESYKEHLLKLELLAENIKDSDTDVTEKETMTDLTQEELLYEAESSRNEIQVLRN 1586
Query: 262 DLVKLEFSDHDDVYQRYRRPTAGPQELSKTKFVSMAEAIYHYQRD 396
+ +LE HDD + R T GP++ S + + I H++ D
Sbjct: 1587 KIERLEHLSHDD---QVRIVTQGPEQ-SLACELGTLDMIAHHEYD 1627
>SB_35960| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 843
Score = 29.1 bits (62), Expect = 3.0
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Frame = +1
Query: 121 AKMNIKDEPVTPIEEDFGEHNN-LDSYENDYG--SMRKSLSMNDIAALRE--DLVKLEFS 285
AK DE E++ H+ L+ Y+ DYG R+ ++ A RE L K F+
Sbjct: 417 AKFQSNDESPALAEKE--RHDKALEKYQQDYGRYQQRRQKILDWQAQSRERGSLAKQNFT 474
Query: 286 DHDDVYQRYRRPTAGPQ 336
D D + Y + + GP+
Sbjct: 475 DTDYALKLYNQTSLGPR 491
>SB_7122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 388 QRDTPGRFRST-KPQIFRTQGRAGPNGLTVPQSPML 492
QR R R K + RT+G GP GL VP + ML
Sbjct: 356 QRRLEARKRGALKSEGTRTEGNRGPEGLNVPWTTML 391
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/58 (29%), Positives = 27/58 (46%)
Frame = +1
Query: 118 NAKMNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMNDIAALREDLVKLEFSDH 291
N +I+DE + ++ E NN D +R+ +D+ ALR L + E DH
Sbjct: 964 NQARDIRDECLLLLDSQRAESNNEDERNQIERKLREEQHQSDLEALRRQL-EGEHEDH 1020
>SB_51400| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 455
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 127 MNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMNDIAALREDL--VKLEFSDHDDV 300
MN+ EP I E F Y+ + ++RK L+M+D R + L S +DV
Sbjct: 340 MNVPCEPA--IMEHFDYMKLCQEYQKEIKNLRKELAMHDTLTNRSQISYEPLSESQIEDV 397
Query: 301 YQRYRRPTAGPQELSKTKFVSMAE 372
+ +R +G +L + V+M +
Sbjct: 398 KDQVKRFLSG--DLDDIELVNMRQ 419
>SB_39336| Best HMM Match : Kinesin (HMM E-Value=0)
Length = 558
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Frame = +1
Query: 127 MNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMNDIAALREDL--VKLEFSDHDDV 300
MN+ EP I E F Y+ + ++RK L+M+D R + L S +DV
Sbjct: 340 MNVPCEPA--IMEHFDYMKLCQEYQKEIKNLRKELAMHDTLTNRSQISYEPLSESQIEDV 397
Query: 301 YQRYRRPTAGPQELSKTKFVSMAE 372
+ +R +G +L + V+M +
Sbjct: 398 KDQVKRFLSG--DLDDIELVNMRQ 419
>SB_11742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.9 bits (59), Expect = 7.0
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 166 DFGEHNNLDSYENDYGSMRKSLSMNDIAALREDLVKLEFSDHDDVYQRYRRPTAG 330
D + N+++ +ND + MND+ + ++ + + +D D Y RYRRP G
Sbjct: 104 DMNDDNDMND-DNDMNDDNDNNDMNDMNDMNDENDENDMND-DQAY-RYRRPRGG 155
>SB_6116| Best HMM Match : Patched (HMM E-Value=0.025)
Length = 831
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +1
Query: 34 TFYFVYFETQKMAKNYVTNFRGESFFTPNA 123
TF F+ ++QK + FRGE FF A
Sbjct: 616 TFDFINPDSQKWFMEFCRRFRGEEFFAKKA 645
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,116,406
Number of Sequences: 59808
Number of extensions: 369974
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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