Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j22
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contai...    31   0.61 
At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   4.3  
At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger) fa...    28   5.7  
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    28   5.7  
At5g28290.1 68418.m03434 protein kinase, putative similar to LST...    27   7.5  
At2g43250.1 68415.m05375 expressed protein  and genefinder             27   7.5  
At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger) fa...    27   10.0 
At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger) fa...    27   10.0 
At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /...    27   10.0 

>At1g66170.1 68414.m07511 PHD finger family protein (MMD1) contains
           Pfam profile: PF00628: PHD-finger
          Length = 704

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 459 RACTSLGSKYLRFS*TKSTRSISLIMVYSLCHGHKLRFGQFLWSRC 322
           R C SLG++ +        RS+ L ++Y + +GH   FG++ +  C
Sbjct: 172 RLCNSLGARMITVEDLAKKRSVELRLLYGVAYGHSW-FGRWGYKFC 216


>At1g55290.1 68414.m06316 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GI:5924383 from [Daucus
           carota]; contains PF03171 2OG-Fe(II) oxygenase
           superfamily domain
          Length = 361

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 18/82 (21%), Positives = 33/82 (40%)
 Frame = +2

Query: 239 TTLQPFVKILLSWNSVIMMMCTKDIGDRQRDHKNCPKRSLCPWQRLYTIIKEILRVDFVQ 418
           T+  P  +  L W   + +    +    Q    +C   +L        ++K++LR     
Sbjct: 136 TSFSPHAEKALEWKDYLSLFFVSEAEASQLWPDSCRSETLEYMNETKPLVKKLLRFLGEN 195

Query: 419 LNLKYLEPKDVQALMGSQFLSL 484
           LN+K L+       MGS  ++L
Sbjct: 196 LNVKELDKTKESFFMGSTRINL 217


>At2g18650.1 68415.m02173 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 finger protein RHX1a
           [Arabidopsis thaliana] GI:3790591; contains Pfam profile
           PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 423

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = +1

Query: 97  GESFFTPNAKMNIKDEPVTPIEEDFGEHNNLDSYENDYGSMRKSLSMN 240
           G     P+  M+  DE V P+E   G+  N+D         + S+S N
Sbjct: 224 GRKSCDPDGDMDGLDEKVVPLEVKLGKFRNIDHVGEGSDQKKNSISGN 271


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/52 (26%), Positives = 30/52 (57%)
 Frame = -2

Query: 399 SISLIMVYSLCHGHKLRFGQFLWSRCRSPISLVHIIMITEFQLNKIFTKGCN 244
           +++ I+++    G +L  G +LW+       ++ +++I EF +   F+KGCN
Sbjct: 103 TLTSILIFFKIPGLELS-GHYLWA-------ILTVVVIFEFSIGATFSKGCN 146


>At5g28290.1 68418.m03434 protein kinase, putative similar to
           LSTK-1-like kinase [Lycopersicon esculentum]
           GI:15637110; contains Pfam profile: PF00069 Eukaryotic
           protein kinase domain
          Length = 568

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 265 LVKLEFSDHDDVYQRYRRPTAGPQELSKTKFVSMAEAIYHYQRDTPGRFRSTKP 426
           L+KL F +HD +     R ++ PQ+  +T   S++     +  D      S KP
Sbjct: 266 LLKLSFREHDTLPSESERRSSYPQQRKRTSGKSVSFGPSRFGVDQEDSVSSVKP 319


>At2g43250.1 68415.m05375 expressed protein  and genefinder
          Length = 625

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 103 FHHEN*SRNFWPFSVFRNTQNKK 35
           F   N  +N WPFS+F+N+  K+
Sbjct: 4   FFFANSLQNIWPFSIFQNSDLKE 26


>At4g25230.2 68417.m03631 zinc finger (C3HC4-type RING finger)
           family protein similar to autocrine motility factor
           receptor [Mus musculus] GI:5931953; contains Pfam
           profiles PF00097: Zinc finger, C3HC4 type (RING finger),
           PF02845: CUE domain
          Length = 578

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +2

Query: 275 WNSVIMMMCTKDIGD---RQRDHKNCPKRSLCPWQ--RLYTIIKEILRVDFVQLNLKYLE 439
           W   + ++CT  +     R R  +     S  PW   R+Y+++  +L VD   + L  + 
Sbjct: 123 WTVWLTVLCTLKMFQALARDRLERLNASPSSTPWTYFRVYSVLFLVLSVDMFWIKLSLMT 182

Query: 440 PKDVQALMGSQFLSLPCSVA 499
              + + +    L  PCS+A
Sbjct: 183 YNTIGSAVYLLLLFEPCSIA 202


>At4g25230.1 68417.m03630 zinc finger (C3HC4-type RING finger)
           family protein similar to autocrine motility factor
           receptor [Mus musculus] GI:5931953; contains Pfam
           profiles PF00097: Zinc finger, C3HC4 type (RING finger),
           PF02845: CUE domain
          Length = 578

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
 Frame = +2

Query: 275 WNSVIMMMCTKDIGD---RQRDHKNCPKRSLCPWQ--RLYTIIKEILRVDFVQLNLKYLE 439
           W   + ++CT  +     R R  +     S  PW   R+Y+++  +L VD   + L  + 
Sbjct: 123 WTVWLTVLCTLKMFQALARDRLERLNASPSSTPWTYFRVYSVLFLVLSVDMFWIKLSLMT 182

Query: 440 PKDVQALMGSQFLSLPCSVA 499
              + + +    L  PCS+A
Sbjct: 183 YNTIGSAVYLLLLFEPCSIA 202


>At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein similar to
           GI:807956 from [Saccharomyces cerevisiae]similar to
           polyphosphoinositide binding protein Ssh2p (GI:2739046)
           {Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain;
           contains Pfam PF03765 : CRAL/TRIO, N-terminus
          Length = 490

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 418 LNEIYPEYLFDNGI*PLPWTQTSFWTVL 335
           L + YPE++F      +PW    F+TV+
Sbjct: 305 LQDNYPEFVFKQAFINVPWWYLVFYTVI 332


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,737,753
Number of Sequences: 28952
Number of extensions: 255361
Number of successful extensions: 690
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)