Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j21
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    27   2.2  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    26   3.9  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.2  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   5.2  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    25   6.8  
SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyce...    25   6.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   9.0  

>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +1

Query: 400 ETDTTPMSEHLKAVYQKT*IYFILLYTYNYIIVCHWELSSK 522
           E  +TP+   L  +Y+K  + F  LYTY +++   W+L SK
Sbjct: 159 EALSTPLE--LAVLYKKLVVLFRSLYTYTHLMPL-WKLKSK 196


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 4/31 (12%)
 Frame = +2

Query: 77  HEDLEFICVGQPMHNF----LSMSRHPEKQT 157
           H DL++   G  +HNF    L M  HP+K++
Sbjct: 377 HLDLQYKLQGSTLHNFKVESLKMLNHPDKKS 407


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 320 ANEILDKLFLKLLDVSLCHTVP-LRVKSA*SCGSRRKSAHLSQA 192
           A +++ ++  KLL V +C TVP +R+    S  S R + HL+QA
Sbjct: 520 AIQVVAEVLEKLLTVGICDTVPDIRLTVLNSLDS-RFNKHLAQA 562


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -3

Query: 459 YLSFLVNCFQMFTHW 415
           YLS + N  Q FTHW
Sbjct: 398 YLSLIYNSIQPFTHW 412


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 45  DIIRTYQASAIMKTWSL 95
           D+IRTYQA  + + W +
Sbjct: 437 DVIRTYQAKKLFEDWKI 453


>SPBC27B12.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +1

Query: 484 NYIIVCHWELSSKTIQIPSTFY*NLR*RSLLYDIVYREGSCEAH 615
           N+I+ CH ELSS  +   S  Y  L   +  YD V   GS E H
Sbjct: 92  NFILHCHHELSSGELLRNSALYSILYIAAGAYDSV---GSFEEH 132


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 75  IMKTWSLYALVSPCTISY 128
           ++  W LY +V+ CTI+Y
Sbjct: 832 LLVQWKLYLIVACCTITY 849


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,642,568
Number of Sequences: 5004
Number of extensions: 54213
Number of successful extensions: 117
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)