Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j21
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0436 + 14006683-14006863,14007618-14008036                       30   1.7  
05_03_0197 + 9607586-9607592,9607652-9607940,9608599-9608817,961...    29   3.0  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   3.0  
07_03_1690 - 28716998-28717091,28717203-28717897,28718264-287184...    29   4.0  
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127...    28   7.0  
04_03_0461 - 16165126-16165419,16165947-16166195,16168510-161686...    28   7.0  
04_03_0454 - 16071490-16071534,16071849-16071980,16072523-160727...    28   7.0  

>05_03_0436 + 14006683-14006863,14007618-14008036
          Length = 199

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +2

Query: 284 VILETIYLEFHLLNHSL*KELRGFSNY 364
           V+L+   LEF+LL H   KEL+ FS Y
Sbjct: 162 VLLDLAKLEFNLLQHVHLKELKSFSQY 188


>05_03_0197 +
           9607586-9607592,9607652-9607940,9608599-9608817,
           9610270-9610405,9610975-9611223,9611523-9611816
          Length = 397

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 272 ETHQV-ILETIYLEFHLLNHSL*KELRGFSNY 364
           E H V +L+   LEF+LL H   KELR FS +
Sbjct: 69  EGHNVDLLDLAKLEFNLLQHVHLKELRNFSQW 100


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = +1

Query: 301  LSRISFAKPLFVKRIKRVFKLLSD 372
            L R++FA+PLF+K +  +F +L D
Sbjct: 1451 LPRLAFARPLFMKTLALLFNVLGD 1474


>07_03_1690 -
           28716998-28717091,28717203-28717897,28718264-28718446,
           28718552-28719585,28719805-28719978,28720051-28720168,
           28720339-28720521,28720647-28720739,28720981-28721166,
           28722247-28722507
          Length = 1006

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +2

Query: 227 HNFRLTSLEEGLCDTETHQVILETIYLEFHLLNHSL*KELRGFSNY*VMISWKQHCI 397
           H   +     GL  T   +V++  I+  FH   HS  + L  F  Y     W ++CI
Sbjct: 204 HESHILGAHRGLISTYALEVLVLYIFNIFHKSLHSPLEVLYKFLEYFSKFDWDKYCI 260


>12_01_1041 -
           10711362-10711428,10711571-10712262,10712622-10712777,
           10712885-10713957,10714422-10714524,10714694-10714876,
           10715007-10715099,10715379-10715564,10716530-10716793
          Length = 938

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/57 (26%), Positives = 23/57 (40%)
 Frame = +2

Query: 227 HNFRLTSLEEGLCDTETHQVILETIYLEFHLLNHSL*KELRGFSNY*VMISWKQHCI 397
           H  R+     GL  T   + ++  I+  FH   H   + L  F  Y     W ++CI
Sbjct: 205 HESRILGAHHGLLSTYALETLVLYIFNIFHKSLHGPLEALYKFLEYFSKFDWDKYCI 261


>04_03_0461 -
           16165126-16165419,16165947-16166195,16168510-16168645,
           16171251-16171469,16172738-16173116,16173660-16173918,
           16176052-16176315
          Length = 599

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 284 VILETIYLEFHLLNHSL*KELRGFSNY 364
           V+L+   LEF+LL H   KEL+ FS +
Sbjct: 276 VLLDLAKLEFNLLQHVHLKELKAFSQW 302


>04_03_0454 -
           16071490-16071534,16071849-16071980,16072523-16072771,
           16075090-16075225,16077833-16078051,16079320-16079698,
           16080238-16080478
          Length = 466

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 284 VILETIYLEFHLLNHSL*KELRGFSNY 364
           V+L+   LEF+LL H   KEL+ FS +
Sbjct: 182 VLLDLAKLEFNLLQHVHLKELKAFSQW 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,910,185
Number of Sequences: 37544
Number of extensions: 301673
Number of successful extensions: 551
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)