Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j21
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45562| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_2995| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_51186| Best HMM Match : Cornifin (HMM E-Value=0.00014)              27   9.5  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             27   9.5  

>SB_45562| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 21/50 (42%), Positives = 36/50 (72%)
 Frame = +1

Query: 301 LSRISFAKPLFVKRIKRVFKLLSDDQLEATLYMETDTTPMSEHLKAVYQK 450
           + R+SF KP  V + +RV+ L+ ++ LE   +MET+TTP ++HL+A Y++
Sbjct: 22  IGRMSFGKPPAVLKTERVYMLVDENTLEFKQFMETETTPRTQHLQATYKR 71


>SB_2995| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 118 VHGLTNAYKLQVFMIAEAWYVRIISSCFCCTPTAFP 11
           V   T A+     +   + Y+R +S CF C  TAFP
Sbjct: 41  VDDFTAAFHKSNHIFDSSSYIRFVSFCFHCATTAFP 76


>SB_51186| Best HMM Match : Cornifin (HMM E-Value=0.00014)
          Length = 217

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = +2

Query: 50  YPNIPGFSYHEDLEFICVGQPMHNFLSMSRHPEKQTPIH 166
           Y N+P   Y      +C   P H + +M  H     P H
Sbjct: 46  YTNMPNHMYTNMPNHMCTNMPNHMYTNMPNHMYTNMPNH 84


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 322 KPLFVKRIKRVFKLLSDDQLEATLYMETDTTP 417
           KP     ++R+F  + D+Q   T++ E D TP
Sbjct: 650 KPADTALLRRIFNKVGDEQRIITIFTEKDFTP 681


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,164,536
Number of Sequences: 59808
Number of extensions: 396136
Number of successful extensions: 823
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)