Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j21
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical...    40   0.001
Z75551-4|CAA99934.2|  228|Caenorhabditis elegans Hypothetical pr...    37   0.010
U20861-2|ABD63243.1|  254|Caenorhabditis elegans Hypothetical pr...    34   0.096
U20861-1|AAA62293.1|  302|Caenorhabditis elegans Hypothetical pr...    34   0.096
U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical p...    27   8.4  

>AC006608-11|AAF39761.1|  360|Caenorhabditis elegans Hypothetical
           protein C15F1.1 protein.
          Length = 360

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
 Frame = +2

Query: 17  GRWCTTET-RGYYPNIPGFSYHEDLEFICVGQPMH-----NFLSMSRHPEKQTPIHQE*G 178
           G+W +    +  +P IP F++ E++E    G  M      N+ + +     +  +H E G
Sbjct: 208 GKWRSEHGGKAIFPTIPKFTFGEEIEISIPGDAMQSAQALNYTAFAWSINDKDELHSEYG 267

Query: 179 FLRIKPGINE--LTFVVNHNFRLTSLEEG 259
           ++ +KP   E  LT V+N+ F   ++EEG
Sbjct: 268 YISVKPNTKEVALTTVMNNGF--VTVEEG 294



 Score = 35.5 bits (78), Expect = 0.032
 Identities = 21/51 (41%), Positives = 28/51 (54%)
 Frame = +1

Query: 298 NLSRISFAKPLFVKRIKRVFKLLSDDQLEATLYMETDTTPMSEHLKAVYQK 450
           ++ RISF++ L V  + R + LL    L+A L MET T  M EH    Y K
Sbjct: 307 DIGRISFSRDLPVHDLVREWTLLDRSTLQARLNMETLTHGMQEHTFIRYNK 357


>Z75551-4|CAA99934.2|  228|Caenorhabditis elegans Hypothetical
           protein T28H10.2 protein.
          Length = 228

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 6/87 (6%)
 Frame = +2

Query: 17  GRWCTTET-RGYYPNIPGFSYHEDLEF-ICVGQPMH--NFLSMSRHPEKQTPIHQE*GFL 184
           GRW    T +  +P IP F Y E++E  I  G  +   N+ + +   +K+  +H+E G++
Sbjct: 80  GRWKGEHTGKVTFPTIPTFKYTEEVEISIPEGSNIRSLNYTAAAWSSDKED-LHRESGYI 138

Query: 185 RIKPGINE--LTFVVNHNFRLTSLEEG 259
            IKP   E  LT V+++ F   ++EEG
Sbjct: 139 IIKPNTREVILTTVMSNGF--ITVEEG 163


>U20861-2|ABD63243.1|  254|Caenorhabditis elegans Hypothetical
           protein C28H8.5b protein.
          Length = 254

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 LSRISFAKPLFVKRIKRVFKLLSDDQLEATLYMETD-TTPMSEHLKAVYQK 450
           + RISF+    V+ + R + LL +++LEA L M T  T  + EH   +Y+K
Sbjct: 201 IGRISFSHDSAVRIMFREWTLLDENRLEARLLMTTTITRRLMEHTAVIYKK 251


>U20861-1|AAA62293.1|  302|Caenorhabditis elegans Hypothetical
           protein C28H8.5a protein.
          Length = 302

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +1

Query: 301 LSRISFAKPLFVKRIKRVFKLLSDDQLEATLYMETD-TTPMSEHLKAVYQK 450
           + RISF+    V+ + R + LL +++LEA L M T  T  + EH   +Y+K
Sbjct: 249 IGRISFSHDSAVRIMFREWTLLDENRLEARLLMTTTITRRLMEHTAVIYKK 299


>U88184-14|AAK31520.1|  821|Caenorhabditis elegans Hypothetical
           protein F36H5.1 protein.
          Length = 821

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +2

Query: 59  IPGFSYHEDLEFICVGQPMHNFLSMSRHPEKQT 157
           +  F+  ED++F+C  + +H F  ++R  E +T
Sbjct: 130 VNNFTALEDIDFLCGFKILHTFKHLARFEENET 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,369,656
Number of Sequences: 27780
Number of extensions: 292013
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)