Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j21
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79260.1 68414.m09240 expressed protein                             45   4e-05
At5g15890.1 68418.m01859 expressed protein                             29   2.5  
At2g28460.1 68415.m03457 DC1 domain-containing protein contains ...    29   2.5  
At5g26570.1 68418.m03152 glycoside hydrolase starch-binding doma...    28   4.4  

>At1g79260.1 68414.m09240 expressed protein
          Length = 166

 Score = 45.2 bits (102), Expect = 4e-05
 Identities = 24/94 (25%), Positives = 45/94 (47%)
 Frame = +2

Query: 17  GRWCTTETRGYYPNIPGFSYHEDLEFICVGQPMHNFLSMSRHPEKQTPIHQE*GFLRIKP 196
           G W   +  G YP IP F Y E++ F   G+P+  +   +   E   P+H E G+ R +P
Sbjct: 28  GTW-RGQGEGEYPTIPSFRYGEEIRFSHSGKPVIAYTQKTWKLESGAPMHAESGYFRPRP 86

Query: 197 GINELTFVVNHNFRLTSLEEGLCDTETHQVILET 298
               +  V+  +  L  +++G  + +   + L++
Sbjct: 87  D-GSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKS 119



 Score = 33.9 bits (74), Expect = 0.089
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +1

Query: 334 VKRIKRVFKLLSDDQLEATLYMETDTTPMSEHLKAVYQK 450
           VK I R F+L+ D +L   + M T T P+  HLKA+  K
Sbjct: 128 VKEISREFELV-DGKLSYVVRMSTTTNPLQPHLKAILDK 165


>At5g15890.1 68418.m01859 expressed protein
          Length = 526

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
 Frame = +2

Query: 17  GRWCTTETRGYYPNIPGFSYHEDLEFICVGQPMHNFLSMSRHPEK-QTPIHQE*GFLRIK 193
           G W   E   YY N   ++ HE    +  G+P   F+     PE    PI     FL + 
Sbjct: 192 GEWVPNEEAPYYTNTTCWAIHEHQNCMKYGRPDTGFMRWRWKPESCDLPIFDPQEFLEMV 251

Query: 194 PG 199
            G
Sbjct: 252 RG 253


>At2g28460.1 68415.m03457 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 704

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 124 EIVHGLTNAYKLQVFMIAEAWYVRIISSCFCC 29
           EI H L   + LQ+ ++ E+ Y R+   C+CC
Sbjct: 204 EIKHSLHRKHSLQLVLLDESSYTRV---CYCC 232


>At5g26570.1 68418.m03152 glycoside hydrolase starch-binding
           domain-containing protein similar to SEX1 (starch
           excess) [Arabidopsis thaliana] GI:12044358; contains
           Pfam profile PF00686: Starch binding domain
          Length = 1191

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = +1

Query: 484 NYIIVCHWELSSKTIQIP 537
           N+ +VCHW+ + +T+ +P
Sbjct: 157 NFSVVCHWDATRETLDLP 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,354,207
Number of Sequences: 28952
Number of extensions: 265201
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)