Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j20
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.3  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.2  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   6.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   6.9  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 319 KGIVKVGALDADEHRSVSQKYGVT 390
           KGI+K   L+  EHRS S K G+T
Sbjct: 587 KGIMKTYWLEKREHRSSSTK-GIT 609


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 434 GVCLLPVNILIVGKPVTPYFCDTLLCSSAS 345
           G  LL + +L    P+   FC  L CS+A+
Sbjct: 134 GWLLLMLYLLFATLPLRLSFCVVLACSTAT 163


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 287 TRLLQCPHHGAKNSMIQ 237
           +RL++C HH  +N+ I+
Sbjct: 145 SRLMRCLHHDIENAHIR 161



 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 369 ITEIWSHW-LPHN*DIHREQAHTISRSEDSRRFC*SCFKG 485
           ++ ++SH+   +N ++ RE+    + +ED    C  C  G
Sbjct: 238 VSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLG 277


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 306 CESSKGHCKSRCL 344
           C++  GHC   CL
Sbjct: 36  CQAVNGHCSHLCL 48


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 306 CESSKGHCKSRCL 344
           C++  GHC   CL
Sbjct: 36  CQAVNGHCSHLCL 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,519
Number of Sequences: 438
Number of extensions: 3519
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)