Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov10j18
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8739| Best HMM Match : Peptidase_C26 (HMM E-Value=0.037)            90   1e-18
SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)              73   2e-13
SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.)              68   8e-12
SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)              50   2e-06
SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)                   30   1.5  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)                   29   3.4  
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)               28   5.9  
SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)                 28   5.9  
SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)                28   5.9  

>SB_8739| Best HMM Match : Peptidase_C26 (HMM E-Value=0.037)
          Length = 149

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 48/110 (43%), Positives = 67/110 (60%)
 Frame = +2

Query: 332 VLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVILASGRGKKE 511
           VL PGG +   +S GYA  G  I++LA+E ND GD FP++GTCLGF+LL + A+ +GK  
Sbjct: 2   VLFPGGDSDLWKS-GYARTGAAIFDLAMEANDNGDVFPLWGTCLGFQLLHVRAA-KGKDV 59

Query: 512 NRITCHSFGNLPLDFTSDFRSSKMFREVPEDVADILANQDVTINAHXFCI 661
                    +LPL+FT  ++ S+MFR    DV   +A   VT+N H  C+
Sbjct: 60  LTKCSGENVSLPLNFTDGYKDSRMFRNAHNDVTQDMAKLGVTLNMHVNCV 109


>SB_46752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 686

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
 Frame = +2

Query: 305 KELMKKINGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVI 484
           +++   ++GV+ PGG    N S  YA  G+ I ELAI+ N  G+ FP++  CLG EL+ +
Sbjct: 478 EKMFHSVSGVVFPGGHIKLNASR-YAAVGKQILELAIKENLKGEVFPVWAECLGLELISM 536

Query: 485 LASG----RGKKENRITCHSFGN---LPLDFTSDFRSSKMFREVPEDVADILANQDVTIN 643
           + SG     G+ +N +  ++      LPL  T DFR SK+F    + + D + +  +  N
Sbjct: 537 IISGVSLNHGQYKNNLLHYTDARNLLLPLKLTPDFRQSKLFGTASQQLIDHIQSHPIAYN 596

Query: 644 AH 649
            H
Sbjct: 597 NH 598


>SB_44698| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 39/116 (33%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
 Frame = +2

Query: 323 INGVLIPGGATFFNQSNGYADAGQHIYELAIELNDVGDYFPIFGTCLGFELLVILASGRG 502
           I  +++PGG      SN Y   G+ +YELA+E N+ G  FPI+  CLGFELL + ASGRG
Sbjct: 78  IQRLVLPGGHVRLQDSN-YGKIGKRLYELAVEANNKGSVFPIWAECLGFELLALCASGRG 136

Query: 503 KKENRITCHSFG-------NLPLDFTSDFRSSKMFREVPEDVADILANQDVTINAH 649
               +     F        ++P+    D+  S+       D+   L N     N H
Sbjct: 137 VTHGQFDEALFEYTDAKNYSVPVQLVKDYTKSRFLGTASPDMIGYLNNSLKAFNNH 192


>SB_3484| Best HMM Match : Ribosomal_L17 (HMM E-Value=2.4)
          Length = 103

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 26/56 (46%), Positives = 39/56 (69%)
 Frame = +2

Query: 113 SNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPIL 280
           ++E S+  ++PIIG+L+QE +    GK  +E    YI  SYV+ +E++GARVVPIL
Sbjct: 42  ADESSIRTNQPIIGILAQEAT----GKISKEVSGQYIEGSYVQMVESAGARVVPIL 93


>SB_13255| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 24/73 (32%), Positives = 41/73 (56%)
 Frame = +2

Query: 59  LLLLWLYVFHCEGAVIVDSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYV 238
           ++L   +V   +   I       +  +RPIIG+L+ +    +  K+ +    S+I +SYV
Sbjct: 167 VILSLFFVGSAKARSIQHPTRDGLYTNRPIIGILAHDIDDDIIKKYGK----SFIPASYV 222

Query: 239 KDIEASGARVVPI 277
           K +E++GARVVPI
Sbjct: 223 KYLESAGARVVPI 235


>SB_21330| Best HMM Match : JmjC (HMM E-Value=0.0054)
          Length = 304

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = +2

Query: 155 VLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPILIGKDRSYYKELMKKINGV 334
           +L Q Q+   H  +  E  +  +    + D+ A      P +   D  Y +  M K + +
Sbjct: 45  LLGQNQT---HLVYESEESSKELGGFSIVDVNAVDLEKFPSI--SDVKYSRITMNKGDCI 99

Query: 335 LIPGGATFFNQSNGYADAGQHI-YELAIELNDVG 433
            +PGG     +SNGY +    I +    E +D+G
Sbjct: 100 FVPGGIWHHVRSNGYMNTAVSIWFSRLYEFSDMG 133


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 101  VIVDSNEYSVVNDRPIIGVLSQEQSFYLHGKFPEENYTSYIASSYVKDIEASGARVVPIL 280
            VI  S  + V  ++  IGV+S     ++H  F + +  SY+  + + DI  SG     + 
Sbjct: 3975 VIGVSKSFDVSPNKTRIGVVSYSSDAHIHFNFKKHSNVSYVEEA-INDISFSGGAKRNLA 4033

Query: 281  IGKDRSY 301
             G D ++
Sbjct: 4034 RGLDATF 4040


>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
          Length = 316

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +1

Query: 331 SIDSRGSNVLQPIQWIR*RRSTHLRACYRIERRRRLFSDLRNLSWF 468
           S  ++GS+VL P+   + R STH+      +  RR +  +RNL+ F
Sbjct: 112 SNQAQGSDVLLPLHISKERFSTHINLLLYSQGERRHYCLIRNLNRF 157


>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
          Length = 910

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 331 SIDSRGSNVLQPIQWIR*RRSTHLRACYRIERRRRLFSDLRNLSWF 468
           S  ++GS+VL P+   + R STH+         RR +  +RNL+ F
Sbjct: 180 SNQAQGSDVLLPLHISKKRFSTHINLLLYSHGERRHYCLIRNLNRF 225


>SB_33447| Best HMM Match : 7tm_1 (HMM E-Value=0.00026)
          Length = 557

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 56  ALLLLWLYVFHCEGAVIVDSNEYSVVNDR 142
           A++L+W+YV       +V  N+Y  V+DR
Sbjct: 176 AIILIWIYVTFLAAMPLVGWNQYVYVDDR 204


>SB_11496| Best HMM Match : DUF408 (HMM E-Value=7.3e-07)
          Length = 825

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 152 GVLSQEQSFYLHGKFPEENYTSYIASSYVK 241
           G    E+S  +HGK PE+ Y+SY   S  K
Sbjct: 783 GFTDLEKSRRIHGKSPEQFYSSYCTDSKQK 812


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,900,244
Number of Sequences: 59808
Number of extensions: 446912
Number of successful extensions: 1120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)